sjanssen2
by sjanssen2
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Packages
| Name | Latest Version | Summary | Updated | License |
|---|
| tempted | 0.1.0 | Perform dimensionality reduction for multivariate longitudinal data, with a special attention to longitudinal mirobiome studies. | Mar 25, 2025 | — |
| isolateasvs | 0.1.0 | BLAST cd-hit and mafft to find ASV to longer isolate DNA associations | Mar 25, 2025 | — |
| bugbase | 0.1.0 | Analyze microbiome samples with the default phenotypes, as well as the KEGG pathways. | Mar 25, 2025 | — |
| maxbin | 2.2.4 | — | Mar 25, 2025 | — |
| sourcetracker2 | 2.0.1 | SourceTracker is designed to predict the source of microbial communities in a set of input samples (i.e., the sink samples) | Mar 25, 2025 | — |
| ggmap | 0.3.0 | — | Mar 25, 2025 | — |
| picrust1 | 1.1.4 | Phylogenetic Investigation of Communities by Reconstruction of Unobserved States | Mar 25, 2025 | — |
| dada2_pacbio | 1.12 | Using DADA2 to obtain ASVs for PacBio datasets. | Mar 25, 2025 | — |
| feast | 0.0.1 | — | Mar 25, 2025 | — |
| pldist | 0.0.1 | Paired and Longitudinal Ecological Dissimilarities | Mar 25, 2025 | — |
| metalonda | 1.1.1 | METAgenomic LONgitudinal Differential Abundance method | Mar 25, 2025 | — |
| flowsofine | 0.1.0 | The goal of FlowSoFine is to quickly and easily generate data structures that make it easy to get statistical output starting from raw fcs-files and a metadata table. | Mar 25, 2025 | GPLv3+ |
| pasta | 1.9.0 | An implementation of the PASTA (Practical Alignment using Sate and TrAnsitivity) algorithm | Mar 25, 2025 | GPLv3 |