| Package Name | Access | Summary | Updated |
|---|---|---|---|
| isolateasvs | public | BLAST cd-hit and mafft to find ASV to longer isolate DNA associations | 2025-03-25 |
| tempted | public | Perform dimensionality reduction for multivariate longitudinal data, with a special attention to longitudinal mirobiome studies. | 2025-03-25 |
| pasta | public | An implementation of the PASTA (Practical Alignment using Sate and TrAnsitivity) algorithm | 2025-03-25 |
| flowsofine | public | The goal of FlowSoFine is to quickly and easily generate data structures that make it easy to get statistical output starting from raw fcs-files and a metadata table. | 2025-03-25 |
| sourcetracker2 | public | SourceTracker is designed to predict the source of microbial communities in a set of input samples (i.e., the sink samples) | 2025-03-25 |
| pldist | public | Paired and Longitudinal Ecological Dissimilarities | 2025-03-25 |
| dada2_pacbio | public | Using DADA2 to obtain ASVs for PacBio datasets. | 2025-03-25 |
| metalonda | public | METAgenomic LONgitudinal Differential Abundance method | 2025-03-25 |
| bugbase | public | Analyze microbiome samples with the default phenotypes, as well as the KEGG pathways. | 2025-03-25 |
| picrust1 | public | Phylogenetic Investigation of Communities by Reconstruction of Unobserved States | 2025-03-25 |
| feast | public | No Summary | 2025-03-25 |
| ggmap | public | No Summary | 2025-03-25 |
| maxbin | public | No Summary | 2025-03-25 |
