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bioconductor-delayedarray
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public |
A unified framework for working transparently with on-disk and in-memory array-like datasets
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2025-03-25 |
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bioconductor-matrixgenerics
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public |
S4 Generic Summary Statistic Functions that Operate on Matrix-Like Objects
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2025-03-25 |
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bioconductor-genomeinfodb
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public |
Utilities for manipulating chromosome names, including modifying them to follow a particular naming style
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2025-03-25 |
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bioconductor-iranges
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public |
Foundation of integer range manipulation in Bioconductor
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2025-03-25 |
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bioconductor-s4vectors
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public |
Foundation of vector-like and list-like containers in Bioconductor
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2025-03-25 |
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bioconductor-biobase
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public |
Biobase: Base functions for Bioconductor
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2025-03-25 |
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bioconductor-biocgenerics
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public |
S4 generic functions used in Bioconductor
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2025-03-25 |
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ucsc-bedgraphtobigwig
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public |
Remove lines from bed file that refer to off-chromosome places.
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2025-03-25 |
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ucsc-bedclip
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public |
Remove lines from bed file that refer to off-chromosome places.
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2025-03-25 |
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subread
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public |
High-performance read alignment, quantification, and mutation discovery
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2025-03-25 |
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pysam
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public |
Pysam is a Python module for reading and manipulating SAM/BAM/VCF/BCF files. It's a lightweight wrapper of the htslib C-API, the same one that powers samtools, bcftools, and tabix.
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2025-03-25 |
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preseq
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public |
predicting library complexity and genome coverage in high-throughput sequencing
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2025-03-25 |
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pybigwig
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public |
A python extension written in C for quick access to bigWig files.
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2025-03-25 |
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dnaio
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public |
Read and write FASTA and FASTQ files efficiently
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2025-03-25 |
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cutadapt
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public |
Trim adapters from high-throughput sequencing reads
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2025-03-25 |
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bx-python
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public |
Tools for manipulating biological data, particularly multiple sequence alignments
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2025-03-25 |
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pbzip2
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public |
PBZIP2 is a parallel implementation of the bzip2 block-sorting file compressor
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2025-03-25 |
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star
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public |
An RNA-seq read aligner.
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2025-03-25 |
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salmon
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public |
Highly-accurate & wicked fast transcript-level quantification from RNA-seq reads using selective alignment
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2025-03-25 |
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python-isal
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public |
Faster zlib and gzip compatible compression and decompression by providing python bindings for the isa-l library.
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2025-03-25 |
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xopen
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public |
Open compressed files transparently in Python
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2025-03-25 |
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gffread
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public |
GFF/GTF utility providing format conversions, region filtering, FASTA sequence extraction and more.
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2025-03-25 |
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stringtie
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public |
StringTie is a fast and highly efficient assembler of RNA-Seq alignments into potential transcripts.
|
2025-03-25 |
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rseqc
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public |
RNA-seq QC Package
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2025-03-25 |
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htslib
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public |
C library for high-throughput sequencing data formats.
|
2025-03-25 |
