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seqera / packages / bioconductor-tximport 1.22.0

Import and summarize transcript-level estimates for transcript- and gene-level analysis

Installers

  • noarch v1.22.0

conda install

To install this package run one of the following:
conda install seqera::bioconductor-tximport

Description

Imports transcript-level abundance, estimated counts and transcript lengths, and summarizes into matrices for use with downstream gene-level analysis packages. Average transcript length, weighted by sample-specific transcript abundance estimates, is provided as a matrix which can be used as an offset for different expression of gene-level counts.


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