| Package Name | Access | Summary | Updated |
|---|---|---|---|
| medaka | public | Neural network sequence error correction. | 2025-03-25 |
| theiacov-gc | public | Command-line version of the TheiaCov genomic characterization workflow for SARS-CoV-2. | 2025-03-25 |
| pmga | public | Command-line version of PMGA (PubMLST Genome Annotator) for all Neisseria species and Haemophilus influenzae | 2025-03-25 |
| titan-gc | public | Command-line version of the Titan genomic characterization workflow for viral pathogens of concern. | 2025-03-25 |
| artic | public | ARTIC pipeline - a bioinformatics pipeline for working with virus sequencing data sequenced with nanopore | 2025-03-25 |
| titan-nf | public | A Nextflow wrapper around the Titan GC workflow | 2025-03-25 |
| aspera-connect | public | aspera connect high-performance transfer plug-in | 2025-03-25 |
| bactopia | public | Bactopia is a flexible pipeline for complete analysis of bacterial genomes. | 2025-03-25 |
