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rdonnellyr / packages

Package Name Access Summary Updated
r-git2r public Interface to the 'libgit2' library, which is a pure C implementation of the 'Git' core methods. Provides access to 'Git' repositories to extract data and running some basic 'Git' commands. 2025-03-25
r-fracdiff public Maximum likelihood estimation of the parameters of a fractionally differenced ARIMA(p,d,q) model (Haslett and Raftery, Appl.Statistics, 1989). 2025-03-25
r-foreign public Reading and writing data stored by some versions of 'Epi Info', 'Minitab', 'S', 'SAS', 'SPSS', 'Stata', 'Systat', 'Weka', and for reading and writing some 'dBase' files. 2025-03-25
r-forecast public Methods and tools for displaying and analysing univariate time series forecasts including exponential smoothing via state space models and automatic ARIMA modelling. 2025-03-25
r-feather public Read and write feather files, a lightweight binary columnar data store designed for maximum speed. 2025-03-25
r-essentials public Some essential packages for working with R 2025-03-25
r-e1071 public Functions for latent class analysis, short time Fourier transform, fuzzy clustering, support vector machines, shortest path computation, bagged clustering, naive Bayes classifier, ... 2025-03-25
r-dplyr public A fast, consistent tool for working with data frame like objects, both in memory and out of memory. 2025-03-25
r-dimred public A collection of dimensionality reduction techniques from R packages and provides a common interface for calling the methods. 2025-03-25
r-digest public Implementation of a function 'digest()' for the creation of hash digests of arbitrary R objects (using the 'md5', 'sha-1', 'sha-256', 'crc32', 'xxhash' and 'murmurhash' algorithms) permitting easy comparison of R language objects, as well as a function 'hmac()' to create hash-based message authentication code. Please note that this package is not meant to be deployed for cryptographic purposes for which more comprehensive (and widely tested) libraries such as 'OpenSSL' should be used. 2025-03-25
r-devtools public Collection of package development tools. 2025-03-25
r-ddalpha public Contains procedures for depth-based supervised learning, which are entirely non-parametric, in particular the DDalpha-procedure (Lange, Mosler and Mozharovskyi, 2014 <doi:10.1007/s00362-012-0488-4>). The training data sample is transformed by a statistical depth function to a compact low-dimensional space, where the final classification is done. It also offers an extension to functional data and routines for calculating certain notions of statistical depth functions. 50 multivariate and 5 functional classification problems are included. 2025-03-25
r-data.table public Fast aggregation of large data (e.g. 100GB in RAM), fast ordered joins, fast add/modify/delete of columns by group using no copies at all, list columns, friendly and fast character-separated-value read/write. Offers a natural and flexible syntax, for faster development. 2025-03-25
r-curl public The curl() and curl_download() functions provide highly configurable drop-in replacements for base url() and download.file() with better performance, support for encryption (https, ftps), gzip compression, authentication, and other 'libcurl' goodies. The core of the package implements a framework for performing fully customized requests where data can be processed either in memory, on disk, or streaming via the callback or connection interfaces. Some knowledge of 'libcurl' is recommended; for a more-user-friendly web client see the 'httr' package which builds on this package with http specific tools and logic. 2025-03-25
r-commonmark public The CommonMark specification defines a rationalized version of markdown syntax. This package uses the 'cmark' reference implementation for converting markdown text into various formats including html, latex and groff man. In addition it exposes the markdown parse tree in xml format. The latest version of this package also adds support for Github extensions including tables, autolinks and strikethrough text. 2025-03-25
r-colorspace public Carries out mapping between assorted color spaces including RGB, HSV, HLS, CIEXYZ, CIELUV, HCL (polar CIELUV), CIELAB and polar CIELAB. Qualitative, sequential, and diverging color palettes based on HCL colors are provided along with an interactive palette picker (with either a Tcl/Tk or a shiny GUI). 2025-03-25
r-coin public Conditional inference procedures for the general independence problem including two-sample, K-sample (non-parametric ANOVA), correlation, censored, ordered and multivariate problems. 2025-03-25
r-cluster public Methods for Cluster analysis. Much extended the original from Peter Rousseeuw, Anja Struyf and Mia Hubert, based on Kaufman and Rousseeuw (1990) "Finding Groups in Data". 2025-03-25
r-classint public Selected commonly used methods for choosing univariate class intervals for mapping or other graphics purposes. 2025-03-25
r-class public Various functions for classification, including k-nearest neighbour, Learning Vector Quantization and Self-Organizing Maps. 2025-03-25
r-chron public Provides chronological objects which can handle dates and times. 2025-03-25
r-checkmate public Tests and assertions to perform frequent argument checks. A substantial part of the package was written in C to minimize any worries about execution time overhead. 2025-03-25
r-catools public Contains several basic utility functions including: moving (rolling, running) window statistic functions, read/write for GIF and ENVI binary files, fast calculation of AUC, LogitBoost classifier, base64 encoder/decoder, round-off-error-free sum and cumsum, etc. 2025-03-25
r-caret public Misc functions for training and plotting classification and regression models. 2025-03-25
r-brglm public Fit generalized linear models with binomial responses using either an adjusted-score approach to bias reduction or maximum penalized likelihood where penalization is by Jeffreys invariant prior. These procedures return estimates with improved frequentist properties (bias, mean squared error) that are always finite even in cases where the maximum likelihood estimates are infinite (data separation). Fitting takes place by fitting generalized linear models on iteratively updated pseudo-data. The interface is essentially the same as 'glm'. More flexibility is provided by the fact that custom pseudo-data representations can be specified and used for model fitting. Functions are provided for the construction of confidence intervals for the reduced-bias estimates. 2025-03-25
r-bitops public Functions for bitwise operations on integer vectors. 2025-03-25
r-bit64 public Package 'bit64' provides serializable S3 atomic 64bit (signed) integers. These are useful for handling database keys and exact counting in +-2^63. WARNING: do not use them as replacement for 32bit integers, integer64 are not supported for subscripting by R-core and they have different semantics when combined with double, e.g. integer64 + double => integer64. Class integer64 can be used in vectors, matrices, arrays and data.frames. Methods are available for coercion from and to logicals, integers, doubles, characters and factors as well as many elementwise and summary functions. Many fast algorithmic operations such as 'match' and 'order' support inter- active data exploration and manipulation and optionally leverage caching. 2025-03-25
r-bit public True boolean datatype (no NAs), coercion from and to logicals, integers and integer subscripts; fast boolean operators and fast summary statistics. With 'bit' vectors you can store true binary booleans {FALSE,TRUE} at the expense of 1 bit only, on a 32 bit architecture this means factor 32 less RAM and ~ factor 32 more speed on boolean operations. Due to overhead of R calls, actual speed gain depends on the size of the vector: expect gains for vectors of size > 10000 elements. Even for one-time boolean operations it can pay-off to convert to bit, the pay-off is obvious, when such components are used more than once. Reading from and writing to bit is approximately as fast as accessing standard logicals - mostly due to R's time for memory allocation. The package allows to work with pre-allocated memory for return values by calling .Call() directly: when evaluating the speed of C-access with pre-allocated vector memory, coping from bit to logical requires only 70% of the time for copying from logical to logical; and copying from logical to bit comes at a performance penalty of 150%. the package now contains further classes for representing logical selections: 'bitwhich' for very skewed selections and 'ri' for selecting ranges of values for chunked processing. All three index classes can be used for subsetting 'ff' objects (ff-2.1-0 and higher). 2025-03-25
r-bindrcpp public Provides an easy way to fill an environment with active bindings that call a C++ function. 2025-03-25
r-bestglm public Best subset glm using information criteria or cross-validation. Implements PCR and PLS using AIC/BIC. Implements one-standard deviation rule for use with the `caret` package. 2025-03-25
r-bdsmatrix public This is a special case of sparse matrices, used by coxme. 2025-03-25
r-base64enc public This package provides tools for handling base64 encoding. It is more flexible than the orphaned base64 package. 2025-03-25
r-base public R is a free software environment for statistical computing and graphics. 2025-03-25
r-backports public Implementations of functions which have been introduced in R since version 3.0.0. The backports are conditionally exported which results in R resolving the function names to the version shipped with R (if available) and uses the implemented backports as fallback. This way package developers can make use of the new functions without worrying about the minimum required R version. 2025-03-25
r-anomalydetection public Implements procedures developed by Gutierrez et al. (2017, <https://journal.r-project.org/archive/2017/RJ-2017-039/index.html>) to aid in detecting network log anomalies. By combining various multivariate analytic approaches relevant to network anomaly detection, it provides cyber analysts efficient means to detect suspected anomalies requiring further evaluation. 2025-03-25
r-acepack public Two nonparametric methods for multiple regression transform selection are provided. The first, Alternative Conditional Expectations (ACE), is an algorithm to find the fixed point of maximal correlation, i.e. it finds a set of transformed response variables that maximizes R^2 using smoothing functions [see Breiman, L., and J.H. Friedman. 1985. "Estimating Optimal Transformations for Multiple Regression and Correlation". Journal of the American Statistical Association. 80:580-598. <doi:10.1080/01621459.1985.10478157>]. Also included is the Additivity Variance Stabilization (AVAS) method which works better than ACE when correlation is low [see Tibshirani, R.. 1986. "Estimating Transformations for Regression via Additivity and Variance Stabilization". Journal of the American Statistical Association. 83:394-405. <doi:10.1080/01621459.1988.10478610>]. A good introduction to these two methods is in chapter 16 of Frank Harrel's "Regression Modeling Strategies" in the Springer Series in Statistics. 2025-03-25
r-xtable public Coerce data to LaTeX and HTML tables. 2025-03-25
r-xlsxjars public The xlsxjars package collects all the external jars required for the xlxs package. This release corresponds to POI 3.10.1. 2025-03-25
r-xlsx public Provide R functions to read/write/format Excel 2007 and Excel 97/2000/XP/2003 file formats. 2025-03-25
r-withr public A set of functions to run code 'with' safely and temporarily modified global state. Many of these functions were originally a part of the 'devtools' package, this provides a simple package with limited dependencies to provide access to these functions. 2025-03-25
r-whisker public logicless templating, reuse templates in many programming languages including R 2025-03-25
r-visnetwork public Provides an R interface to the 'vis.js' JavaScript charting library. It allows an interactive visualization of networks. 2025-03-25
r-viridislite public Implementation of the 'viridis' - the default -, 'magma', 'plasma', 'inferno', and 'cividis' color maps for 'R'. 'viridis', 'magma', 'plasma', and 'inferno' are ported from 'matplotlib' <http://matplotlib.org/>, a popular plotting library for 'python'. 'cividis', was developed by Jamie R. Nuñez and Sean M. Colby. These color maps are designed in such a way that they will analytically be perfectly perceptually-uniform, both in regular form and also when converted to black-and-white. They are also designed to be perceived by readers with the most common form of color blindness (all color maps in this package) and color vision deficiency ('cividis' only). This is the 'lite' version of the more complete 'viridis' package that can be found at <https://cran.r-project.org/package=viridis>. 2025-03-25
r-viridis public Implementation of the 'viridis' - the default -, 'magma', 'plasma', 'inferno', and 'cividis' color maps for 'R'. 'viridis', 'magma', 'plasma', and 'inferno' are ported from 'matplotlib' <http://matplotlib.org/>, a popular plotting library for 'python'. 'cividis', was developed by Jamie R. Nuñez and Sean M. Colby. These color maps are designed in such a way that they will analytically be perfectly perceptually-uniform, both in regular form and also when converted to black-and-white. They are also designed to be perceived by readers with the most common form of color blindness (all color maps in this package) and color vision deficiency ('cividis' only). 2025-03-25
r-units public Support for measurement units in R vectors, matrices and arrays: automatic propagation, conversion, derivation and simplification of units; raising errors in case of unit incompatibility. Compatible with the POSIXct, Date and difftime classes. Uses the UNIDATA udunits library and unit database for unit compatibility checking and conversion. 2025-03-25
r-timedate public The 'timeDate' class fulfils the conventions of the ISO 8601 standard as well as of the ANSI C and POSIX standards. Beyond these standards it provides the "Financial Center" concept which allows to handle data records collected in different time zones and mix them up to have always the proper time stamps with respect to your personal financial center, or alternatively to the GMT reference time. It can thus also handle time stamps from historical data records from the same time zone, even if the financial centers changed day light saving times at different calendar dates. 2025-03-25
r-tidyverse public The 'tidyverse' is a set of packages that work in harmony because they share common data representations and 'API' design. This package is designed to make it easy to install and load multiple 'tidyverse' packages in a single step. Learn more about the 'tidyverse' at <https://tidyverse.org>. 2025-03-25
r-th.data public Contains data sets used in other packages Torsten Hothorn maintains. 2025-03-25
r-tfruns public Create and manage unique directories for each 'TensorFlow' training run. Provides a unique, time stamped directory for each run along with functions to retrieve the directory of the latest run or latest several runs. 2025-03-25
r-testit public Provides two convenience functions assert() and test_pkg() to facilitate testing R packages. 2025-03-25

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