|
r-pear
|
public |
Package for estimating periodic autoregressive models. Datasets: monthly ozone and Fraser riverflow. Plots: periodic versions of boxplot, auto/partial correlations, moving-average expansion.
|
2025-03-25 |
|
r-peakram
|
public |
When working with big data sets, RAM conservation is critically important. However, it is not always enough to just monitor the size of the objects created. So-called "copy-on-modify" behavior, characteristic of R, means that some expressions or functions may require an unexpectedly large amount of RAM overhead. For example, replacing a single value in a matrix duplicates that matrix in the back-end, making this task require twice as much RAM as that used by the matrix itself. This package makes it easy to monitor the total and peak RAM used so that developers can quickly identify and eliminate RAM hungry code.
|
2025-03-25 |
|
r-peakpick
|
public |
Biologically inspired methods for detecting peaks in one-dimensional data, such as time series or genomics data. The algorithms were originally designed by Weber, Ramachandran, and Henikoff, see documentation.
|
2025-03-25 |
|
r-peacots
|
public |
Calculates the periodogram of a time series, maximum-likelihood fits an Ornstein-Uhlenbeck state space (OUSS) null model and evaluates the statistical significance of periodogram peaks against the OUSS null hypothesis. The OUSS is a parsimonious model for stochastically fluctuating variables with linear stabilizing forces, subject to uncorrelated measurement errors. Contrary to the classical white noise null model for detecting cyclicity, the OUSS model can account for temporal correlations typically occurring in ecological and geological time series.
|
2025-03-25 |
|
r-peacock.test
|
public |
The original definition of the two and three dimensional Kolmogorov-Smirnov two-sample test statistics given by Peacock (1983) is implemented. Two R-functions: peacock2 and peacock3, are provided to compute the test statistics in two and three dimensional spaces, respectively. Note the Peacock test is different from the Fasano and Franceschini test (1987). The latter is a variant of the Peacock test.
|
2025-03-25 |
|
r-pdshiny
|
public |
Interactive shiny application for working with Probability Distributions. Calculations and Graphs are provided.
|
2025-03-25 |
|
r-pdm
|
public |
Measures real distances in pictures. With PDM() function, you can choose one '*.jpg' file, select the measure in mm of scale, starting and and finishing point in the graphical scale, the name of the measure, and starting and and finishing point of the measures. After, ask the user for a new measure.
|
2025-03-25 |
|
r-pdftables
|
public |
Allows the user to convert PDF tables to formats more amenable to analysis ('.csv', '.xml', or '.xlsx') by wrapping the PDFTables API. In order to use the package, the user needs to sign up for an API account on the PDFTables website (<https://pdftables.com/pdf-to-excel-api>). The package works by taking a PDF file as input, uploading it to PDFTables, and returning a file with the extracted data.
|
2025-03-25 |
|
r-pder
|
public |
Data sets for the Panel Data Econometrics with R <doi:10.1002/9781119504641> book.
|
2025-03-25 |
|
r-pcsinr
|
public |
Parallel Constraint Satisfaction (PCS) models are an increasingly common class of models in Psychology, with applications to reading and word recognition (McClelland & Rumelhart, 1981), judgment and decision making (Glöckner & Betsch, 2008; Glöckner, Hilbig, & Jekel, 2014), and several other fields (e.g. Read, Vanman, & Miller, 1997). In each of these fields, they provide a quantitative model of psychological phenomena, with precise predictions regarding choice probabilities, decision times, and often the degree of confidence. This package provides the necessary functions to create and simulate basic Parallel Constraint Satisfaction networks within R.
|
2025-03-25 |
|
r-pcse
|
public |
A function to estimate panel-corrected standard errors. Data may contain balanced or unbalanced panels.
|
2025-03-25 |
|
r-pco
|
public |
Computation of the Pedroni (1999) panel cointegration test statistics. Reported are the empirical and the standardized values.
|
2025-03-25 |
|
r-pch
|
public |
Using piecewise constant hazards models is a very flexible approach for the analysis of survival data. The time line is divided into sub-intervals; for each interval, a different hazard is estimated using Poisson regression.
|
2025-03-25 |
|
r-pcg
|
public |
The package solves linear system of equations Ax=b by using Preconditioned Conjugate Gradient Algorithm where A is real symmetric positive definite matrix. A suitable preconditioner matrix may be provided by user. This can also be used to minimize quadratic function (x'Ax)/2-bx for unknown x.
|
2025-03-25 |
|
r-pcfam
|
public |
We provide several algorithms to compute the genotype ancestry scores (such as eigenvector projections) in the case where highly correlated individuals are involved.
|
2025-03-25 |
|
r-pcensmix
|
public |
Functions for generating progressively Type-II censored data in a mixture structure and fitting models using a constrained EM algorithm. It can also create a progressive Type-II censored version of a given real dataset to be considered for model fitting.
|
2025-03-25 |
|
r-pcamixdata
|
public |
Implements principal component analysis, orthogonal rotation and multiple factor analysis for a mixture of quantitative and qualitative variables.
|
2025-03-25 |
|
r-pbs
|
public |
Periodic B Splines Basis
|
2025-03-25 |
|
r-pbrackets
|
public |
Adds different kinds of brackets to a plot, including braces, chevrons, parentheses or square brackets.
|
2025-03-25 |
|
r-pbo
|
public |
Following the method of Bailey et al., computes for a collection of candidate models the probability of backtest overfitting, the performance degradation and probability of loss, and the stochastic dominance.
|
2025-03-25 |
|
r-pbm
|
public |
Binding models which are useful when analysing protein-ligand interactions by techniques such as Biolayer Interferometry (BLI) or Surface Plasmon Resonance (SPR). Naman B. Shah, Thomas M. Duncan (2014) <doi:10.3791/51383>. Hoang H. Nguyen et al. (2015) <doi:10.3390/s150510481>. After initial binding parameters are known, binding curves can be simulated and parameters can be varied. The models within this package may also be used to fit a curve to measured binding data using non-linear regression.
|
2025-03-25 |
|
r-pbimisc
|
public |
A set of datasets and functions used in the book 'Modele liniowe i mieszane w R, wraz z przykladami w analizie danych'. Datasets either come from real studies or are created to be as similar as possible to real studies.
|
2025-03-25 |
|
r-pbibd
|
public |
The PBIB designs are important type of incomplete block designs having wide area of their applications for example in agricultural experiments, in plant breeding, in sample surveys etc. This package constructs various series of PBIB designs and assists in checking all the necessary conditions of PBIB designs and the association scheme on which these designs are based on. It also assists in calculating the efficiencies of PBIB designs with any number of associate classes. The package also constructs Youden-m square designs which are Row-Column designs for the two-way elimination of heterogeneity. The incomplete columns of these Youden-m square designs constitute PBIB designs. With the present functionality, the package will be of immense importance for the researchers as it will help them to construct PBIB designs, to check if their PBIB designs and association scheme satisfy various necessary conditions for the existence, to calculate the efficiencies of PBIB designs based on any association scheme and to construct Youden-m square designs for the two-way elimination of heterogeneity. R. C. Bose and K. R. Nair (1939) <http://www.jstor.org/stable/40383923>.
|
2025-03-25 |
|
r-pbapply
|
public |
A lightweight package that adds progress bar to vectorized R functions ('*apply'). The implementation can easily be added to functions where showing the progress is useful (e.g. bootstrap). The type and style of the progress bar (with percentages or remaining time) can be set through options. Supports several parallel processing backends.
|
2025-03-25 |
|
r-paws.common
|
public |
Functions for making low-level API requests to Amazon Web Services <https://aws.amazon.com>. The functions handle building, signing, and sending requests, and receiving responses. They are designed to help build higher-level interfaces to individual services, such as Simple Storage Service (S3).
|
2025-03-25 |
|
r-pawacc
|
public |
This is a collection of functions to process, format and store accelerometer data.
|
2025-03-25 |
|
r-patternator
|
public |
Provides a set of functions to efficiently recognize and clean the continuous dorsal pattern of a female brown anole lizard (Anolis sagrei) traced from 'ImageJ', an open platform for scientific image analysis (see <https://imagej.net> for more information), and extract common features such as the pattern sinuosity indices, coefficient of variation, and max-min width.
|
2025-03-25 |
|
r-pathlibr
|
public |
An OO Interface for path manipulation, emulating pythons "pathlib".
|
2025-03-25 |
|
r-patentsview
|
public |
Provides functions to simplify the 'PatentsView' API (<http://www.patentsview.org/api/doc.html>) query language, send GET and POST requests to the API's seven endpoints, and parse the data that comes back.
|
2025-03-25 |
|
r-patchsynctex
|
public |
This utility eases the debugging of literate documents ('noweb' files) by patching the synchronization information (the '.synctex(.gz)' file) produced by 'pdflatex' with concordance information produced by 'Sweave' or 'knitr' and 'Sweave' or 'knitr' ; this allows for bilateral communication between a text editor (visualizing the 'noweb' source) and a viewer (visualizing the resultant 'PDF'), thus bypassing the intermediate 'TeX' file.
|
2025-03-25 |
|
r-patchplot
|
public |
Functions to generate scatterplots with images patches instead of usual glyphs, with associated utilities.
|
2025-03-25 |
|
r-paswr
|
public |
Data and functions for the book PROBABILITY and STATISTICS WITH R.
|
2025-03-25 |
|
r-pastis
|
public |
A pre-processor for mrBayes that assimilates sequences, taxonomic information and tree constraints as per xxx. The main functions of interest for most users will be pastis_simple, pastis_main and conch. The main analysis is conducted with pastis_simple or pastis_main followed by a manual execution of mrBayes (>3.2). The placement of taxa not contained in the tree constraint can be investigated using conch.
|
2025-03-25 |
|
r-pastecs
|
public |
Regularisation, decomposition and analysis of space-time series. The pastecs R package is a PNEC-Art4 and IFREMER (Benoit Beliaeff <[email protected]>) initiative to bring PASSTEC 2000 functionalities to R.
|
2025-03-25 |
|
r-password
|
public |
Create random passwords of letters, numbers and punctuation.
|
2025-03-25 |
|
r-passport
|
public |
Smooths the process of working with country names and codes via powerful parsing, standardization, and conversion utilities arranged in a simple, consistent API. Country name formats include multiple sources including the Unicode Common Locale Data Repository (CLDR, <http://cldr.unicode.org/>) common-sense standardized names in hundreds of languages.
|
2025-03-25 |
|
r-pass.lme
|
public |
Power and sample size calculation for testing fixed effect coefficients in multilevel linear mixed effect models with one or more than one independent populations. Laird, Nan M. and Ware, James H. (1982) <doi:10.2307/2529876>.
|
2025-03-25 |
|
r-pas
|
public |
An R package for polygenic trait analysis.
|
2025-03-25 |
|
r-partsm
|
public |
This package performs basic functions to fit and predict periodic autoregressive time series models. These models are discussed in the book P.H. Franses (1996) "Periodicity and Stochastic Trends in Economic Time Series", Oxford University Press. Data set analyzed in that book is also provided. NOTE: the package was orphaned during several years. It is now only maintained, but no major enhancement are expected, and the maintainer cannot provide any support.
|
2025-03-25 |
|
r-partitionmetric
|
public |
partitionMetric computes a distance between two partitions of a set.
|
2025-03-25 |
|
r-partitionmap
|
public |
Low-dimensional embedding, using Random Forests for multiclass classification
|
2025-03-25 |
|
r-partitionbefsp
|
public |
A collection of functions that can be used to estimate selection and complementarity effects, sensu Loreau & Hector (2001) <doi:10.1038/35083573>, even in cases where data are only available for a random subset of species (i.e. incomplete sample-level data). A full derivation and explanation of the statistical corrections used here is available in Clark et al. (2019) <doi:10.1111/2041-210X.13285>.
|
2025-03-25 |
|
r-partialor
|
public |
Computes Odds Ratio adjusted for a vector of possibly continuous covariates
|
2025-03-25 |
|
r-partiallyoverlapping
|
public |
Tests for a comparison of two partially overlapping samples. A comparison of means using the partially overlapping samples t-test: See Derrick, Russ, Toher and White (2017), Test statistics for the comparison of means for two samples which include both paired observations and independent observations, Journal of Modern Applied Statistical Methods, 16(1). A comparison of proportions using the partially overlapping samples z-test: See Derrick, Dobson-Mckittrick, Toher and White (2015), Test statistics for comparing two proportions with partially overlapping samples. Journal of Applied Quantitative Methods, 10(3).
|
2025-03-25 |
|
r-partdsa
|
public |
A novel tool for generating a piecewise constant estimation list of increasingly complex predictors based on an intensive and comprehensive search over the entire covariate space.
|
2025-03-25 |
|
r-parsetools
|
public |
Tools and utilities for dealing with parse data. Parse data represents the parse tree as data with location and type information. This package provides functions for navigating the parse tree as a data frame.
|
2025-03-25 |
|
r-parse
|
public |
Model-based clustering and identifying informative features based on regularization methods. The package includes three regularization methods - PAirwise Reciprocal fuSE (PARSE) penalty proposed by Wang, Zhou and Hoeting (2016), the adaptive L1 penalty (APL1) and the adaptive pairwise fusion penalty (APFP). Heatmaps are included to shown the identification of informative features.
|
2025-03-25 |
|
r-parentoffspring
|
public |
Conduct the Parent-Offspring Test Using Monomorphic SNP Markers. The similarity to the parents is computed for each offspring, and a plot of similarity for all offspring is produced. One can keep the offspring above some threshold for the similarity for further studies.
|
2025-03-25 |
|
r-paran
|
public |
An implementation of Horn's technique for numerically and graphically evaluating the components or factors retained in a principle components analysis (PCA) or common factor analysis (FA). Horn's method contrasts eigenvalues produced through a PCA or FA on a number of random data sets of uncorrelated variables with the same number of variables and observations as the experimental or observational data set to produce eigenvalues for components or factors that are adjusted for the sample error-induced inflation. Components with adjusted eigenvalues greater than one are retained. paran may also be used to conduct parallel analysis following Glorfeld's (1995) suggestions to reduce the likelihood of over-retention.
|
2025-03-25 |
|
r-paramtest
|
public |
Run simulations or other functions while easily varying parameters from one iteration to the next. Some common use cases would be grid search for machine learning algorithms, running sets of simulations (e.g., estimating statistical power for complex models), or bootstrapping under various conditions. See the 'paramtest' documentation for more information and examples.
|
2025-03-25 |
