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r-netdata
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This package contains all data needed for Dan McFarland's SNA R labs.
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2023-06-16 |
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r-mxkssd
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mxkssd is a package that generates efficient balanced mixed-level k-circulant supersaturated designs by interchanging the elements of the generator vector. The package tries to generate a supersaturated design that has EfNOD efficiency more than user specified efficiency level (mef). The package also displays the progress of generation of an efficient mixed-level k-circulant design through a progress bar. The progress of 100 per cent means that one full round of interchange is completed. More than one full round (typically 4-5 rounds) of interchange may be required for larger designs.
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2023-06-16 |
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r-mvbutils
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public |
Hierarchical workspace tree, code editing and backup, easy package prep, editing of packages while loaded, per-object lazy-loading, easy documentation, macro functions, and miscellaneous utilities. Needed by debug package.
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2023-06-16 |
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r-multxpert
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Implementation of commonly used p-value-based and parametric multiple testing procedures (computation of adjusted p-values and simultaneous confidence intervals) and parallel gatekeeping procedures based on the methodology presented in the book "Multiple Testing Problems in Pharmaceutical Statistics" (edited by Alex Dmitrienko, Ajit C. Tamhane and Frank Bretz) published by Chapman and Hall/CRC Press 2009.
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2023-06-16 |
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r-multiwayvcov
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Exports two functions implementing multi-way clustering using the method suggested by Cameron, Gelbach, & Miller (2011) and cluster (or block) bootstrapping for estimating variance-covariance matrices. Normal one and two-way clustering matches the results of other common statistical packages. Missing values are handled transparently and rudimentary parallelization support is provided.
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2023-06-16 |
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r-multiband
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Algorithms for performing joint parameter estimation in astronomical survey data acquired in multiple bands.
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2023-06-16 |
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r-multfisher
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Calculates exact hypothesis tests to compare a treatment and a reference group with respect to multiple binary endpoints. The tested null hypothesis is an identical multidimensional distribution of successes and failures in both groups. The alternative hypothesis is a larger success proportion in the treatment group in at least one endpoint. The tests are based on the multivariate permutation distribution of subjects between the two groups. For this permutation distribution, rejection regions are calculated that satisfy one of different possible optimization criteria. In particular, regions with maximal exhaustion of the nominal significance level, maximal power under a specified alternative or maximal number of elements can be found. Optimization is achieved by a branch-and-bound algorithm. By application of the closed testing principle, the global hypothesis tests are extended to multiple testing procedures.
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2023-06-16 |
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r-muficokriging
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This package builds multi-fidelity cokriging models from responses with different levels of fidelity. Important functions : MuFicokm, predict.MuFicokm, summary.MuFicokm.
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2023-06-16 |
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r-mrtsamplesize
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Provide a sample size calculator for micro-randomized trials (MRTs) based on methodology developed in Sample Size Calculations for Micro-randomized Trials in mHealth by Liao et al. (2016) <DOI:10.1002/sim.6847>.
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2023-06-16 |
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r-mri
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It provides functions to compute the values of different modifications of the Rand and Wallace indices. The indices are used to measure the stability or similarity of two partitions obtained on two different sets of units with a non-empty intercept. Splitting and merging of clusters can (depends on the selected index) have a different effect on the value of the indices. The indices are proposed in Cugmas and Ferligoj (2018) <http://ibmi.mf.uni-lj.si/mz/2018/no-1/Cugmas2018.pdf>.
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2023-06-16 |
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r-mplikelihoodwb
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Computing modified profile likelihood estimates for Weibull Shape and Regression Parameters. Modified likelihood estimates are provided.
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2023-06-16 |
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r-mpdir
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Data sets and scripts for Modeling Psychophysical Data in R (Springer).
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2023-06-16 |
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r-mpcv
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Multivariate process capability analysis using the multivariate process capability vector. Allows to analyze a multivariate process with both normally and non-normally distributed and also with dependent and independent quality characteristics.
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2023-06-16 |
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r-momentchi2
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A collection of moment-matching methods for computing the cumulative distribution function of a positively-weighted sum of chi-squared random variables. Methods include the Satterthwaite-Welch method, Hall-Buckley-Eagleson method, Wood's F method, and the Lindsay-Pilla-Basak method.
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2023-06-16 |
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r-modmax
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The algorithms implemented here are used to detect the community structure of a network. These algorithms follow different approaches, but are all based on the concept of modularity maximization.
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2023-06-16 |
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r-mmmgee
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Provides global hypothesis tests, multiple testing procedures and simultaneous confidence intervals for multiple linear contrasts of regression coefficients in a single generalized estimating equation (GEE) model or across multiple GEE models. GEE models are fit by a modified version of the 'geeM' package.
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2023-06-16 |
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r-mme
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Fit Gaussian Multinomial mixed-effects models for small area estimation: Model 1, with one random effect in each category of the response variable (Lopez-Vizcaino,E. et al., 2013) <doi:10.1177/1471082X13478873>; Model 2, introducing independent time effect; Model 3, introducing correlated time effect. mme calculates direct and parametric bootstrap MSE estimators (Lopez-Vizcaino,E et al., 2014) <doi:10.1111/rssa.12085>.
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2023-06-16 |
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r-mixraschtools
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Provides supplemental functions for the 'mixRasch' package (Willse, 2014), <https://cran.r-project.org/package=mixRasch/mixRasch.pdf> including a plotting function to compare item parameters for multiple class models and a function that provides average theta values for each class in a mixture model.
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2023-06-16 |
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r-miscfuncs
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public |
Implementing various things including functions for LaTeX tables, the Kalman filter, web scraping, development tools, relative risk and odds ratio.
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2023-06-16 |
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r-misaem
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Estimate parameters of logistic regression with missing data and perform model selection, using algorithm Stochastic Approximation EM.
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2023-06-16 |
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r-minimalrsd
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Generate central composite designs (CCD)with full as well as fractional factorial points (half replicate) and Box Behnken designs (BBD) with minimally changed run sequence.
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2023-06-16 |
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r-midn
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Implementation of the mid-n algorithms presented in Wellek S (2015) <DOI:10.1111/stan.12063> Statistica Neerlandica 69, 358-373 for exact sample size calculation for superiority trials with binary outcome.
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2023-06-16 |
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r-mgsub
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Designed to enable simultaneous substitution in strings in a safe fashion. Safe means it does not rely on placeholders (which can cause errors in same length matches).
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2023-06-16 |
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r-metavcov
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Compute variance-covariance matrix for multivariate meta-analysis. Effect sizes include correlation (r), mean difference (MD), standardized mean difference (SMD), log odds ratio (logOR), log risk ratio (logRR), and risk difference (RD).
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2023-06-16 |
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r-metatest
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Fits and tests meta regression models and generates a number of useful test statistics: next to t- and z-tests, the likelihood ratio, bartlett corrected likelihood ratio and permutation tests are performed on the model coefficients.
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2023-06-16 |
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r-metapca
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MetaPCA implements simultaneous dimension reduction using PCA when multiple studies are combined. We propose two basic ideas to find a common PC subspace by eigenvalue maximization approach and angle minimization approach, and we extend the concept to incorporate Robust PCA and Sparse PCA in the meta-analysis realm.
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2023-06-16 |
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r-metabel
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A package for meta-analysis of genome-wide association scans between quantitative or binary traits and SNPs
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2023-06-16 |
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r-mdplot
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Provides automatization for plot generation succeeding common molecular dynamics analyses. This includes straightforward plots, such as RMSD (Root-Mean-Square-Deviation) and RMSF (Root-Mean-Square-Fluctuation) but also more sophisticated ones such as dihedral angle maps, hydrogen bonds, cluster bar plots and DSSP (Definition of Secondary Structure of Proteins) analysis. Currently able to load GROMOS, GROMACS and AMBER formats, respectively.
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2023-06-16 |
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r-mcs
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Perform the model confidence set procedure of Hansen et al (2011) <doi:10.3982/ECTA5771>.
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2023-06-16 |
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r-mccr
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The Matthews correlation coefficient (MCC) score is calculated (Matthews BW (1975) <DOI:10.1016/0005-2795(75)90109-9>).
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2023-06-16 |
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r-mc2d
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A complete framework to build and study Two-Dimensional Monte-Carlo simulations, aka Second-Order Monte-Carlo simulations. Also includes various distributions (pert, triangular, Bernoulli, empirical discrete and continuous).
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2023-06-16 |
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r-madsim
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This function allows to generate two biological conditions synthetic microarray dataset which has similar behavior to those currently observed with common platforms. User provides a subset of parameters. Available default parameters settings can be modified.
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2023-06-16 |
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r-listviewer
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R lists, especially nested lists, can be very difficult to visualize or represent. Sometimes 'str()' is not enough, so this suite of htmlwidgets is designed to help see, understand, and maybe even modify your R lists. The function 'reactjson()' requires a package 'reactR' that can be installed from CRAN or <https://github.com/timelyportfolio/reactR>.
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2023-06-16 |
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r-nls2
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Adds brute force and multiple starting values to nls.
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2023-06-16 |
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r-nilde
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Routines for enumerating all existing nonnegative integer solutions of a linear Diophantine equation. The package provides routines for solving 0-1, bounded and unbounded knapsack problems; 0-1, bounded and unbounded subset sum problems; additive partitioning of natural numbers; and one-dimensional bin-packing problem.
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2023-06-16 |
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r-nightday
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Computes and plots the boundary between night and day.
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2023-06-16 |
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r-nhsrdatasets
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Free United Kingdom National Health Service (NHS) and other healthcare, or population health-related data for education and training purposes. This package currently contains a single simulated hospital dataset for teaching regression methods, with the addition of more datasets planned for future releases. This package exists to support skills development in the NHS-R community: <https://nhsrcommunity.com/>.
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2023-06-16 |
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r-needs
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A simple function for easier package loading and auto-installation.
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2023-06-16 |
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r-neatranges
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public |
Collapse, partition, combine, fill gaps in and expand date/time ranges.
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2023-06-16 |
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r-nearender
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Performs network enrichment analysis against functional gene sets. Benchmarks networks. Renders raw gene profile matrices of dimensionality "N genes x N samples" into the space of gene set (typically pathway) enrichment scores of dimensionality "N pathways x N samples".
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2023-06-16 |
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r-nbconvertr
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Calls the 'Jupyter'/'IPython' script 'nbconvert' to create vignettes from notebooks. Those notebooks ('.ipynb' files) are files containing rich text, code, and its output. Code cells can be edited and evaluated interactively. See <http://ipython.org/notebook.html> for more information.
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2023-06-16 |
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r-nameneedle
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The Needleman-Wunsch global alignment algorithm can be used to find approximate matches between sample names in different data sets. See Wang et al. (2010) <doi:10.4137/CIN.S5613>.
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2023-06-16 |
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r-namedcapture
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User-friendly wrappers for named capture regular expressions.
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2023-06-16 |
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r-mvnpermute
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Given a vector of multivariate normal data, a matrix of covariates and the data covariance matrix, generate new multivariate normal samples that have the same covariance matrix based on permutations of the transformed data residuals.
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2023-06-16 |
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r-multiwayregression
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Functions to predict one multi-way array (i.e., a tensor) from another multi-way array, using a low-rank CANDECOMP/PARAFAC (CP) factorization and a ridge (L_2) penalty [Lock, EF (2018) <doi:10.1080/10618600.2017.1401544>]. Also includes functions to sample from the Bayesian posterior of a tensor-on-tensor model.
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2023-06-16 |
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r-multipol
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Various utilities to manipulate multivariate polynomials.
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2023-06-16 |
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r-multiassetoptions
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Efficient finite difference method for valuing European and American multi-asset options.
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2023-06-16 |
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r-multeq
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Equivalence tests and related confidence intervals for the comparison of two treatments, simultaneously for one or many normally distributed, primary response variables (endpoints). The step-up procedure of Quan et al. (2001) is both applied for differences and extended to ratios of means. A related single-step procedure is also available.
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2023-06-16 |
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r-mtdrh
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The Mass Transportation Distance rank histogram was developed to assess the reliability of scenarios with equal or different probabilities of occurrence <doi:10.1002/we.1872>.
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2023-06-16 |
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r-msme
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Functions and datasets from Hilbe, J.M., and Robinson, A.P. 2013. Methods of Statistical Model Estimation. Chapman & Hall / CRC.
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2023-06-16 |
