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r-partitionmetric
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public |
partitionMetric computes a distance between two partitions of a set.
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2023-06-16 |
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r-partitionbefsp
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public |
A collection of functions that can be used to estimate selection and complementarity effects, sensu Loreau & Hector (2001) <doi:10.1038/35083573>, even in cases where data are only available for a random subset of species (i.e. incomplete sample-level data). A full derivation and explanation of the statistical corrections used here is available in Clark et al. (2019) <doi:10.1111/2041-210X.13285>.
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2023-06-16 |
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r-parallelpc
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public |
Parallelise constraint based causality discovery and causal inference methods. The parallelised algorithms in the package will generate the same results as that of the 'pcalg' package but will be much more efficient.
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2023-06-16 |
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r-palinsol
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R package to compute Incoming Solar Radiation (insolation) for palaeoclimate studies. Features three solutions: Berger (1978), Berger and Loutre (1991) and Laskar et al. (2004). Computes daily-mean, season-averaged and annual means for all latitudes.
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2023-06-16 |
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r-pairsd3
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Creates an interactive scatterplot matrix using the D3 JavaScript library. See <http://d3js.org/> for more information on D3.
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2023-06-16 |
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r-p3state.msm
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public |
Analyzing survival data from illness-death model
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2023-06-16 |
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r-oshka
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Expands quoted language by recursively replacing any symbol that points to quoted language with the language it points to. The recursive process continues until only symbols that point to non-language objects remain. The resulting quoted language can then be evaluated normally. This differs from the traditional 'quote'/'eval' pattern because it resolves intermediate language objects that would interfere with evaluation.
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2023-06-16 |
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r-ordering
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Functions to test/check/verify/investigate the ordering of vectors. The 'is_[strictly_]*' family of functions test vectors for 'sorted', 'monotonic', 'increasing', 'decreasing' order; 'is_constant' and 'is_incremental' test for the degree of ordering. `ordering` provides a numeric indication of ordering -2 (strictly decreasing) to 2 (strictly increasing).
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2023-06-16 |
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r-optinterim
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public |
Optimal two and three stage designs monitoring time-to-event endpoints at a specified timepoint
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2023-06-16 |
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r-opennlpdata
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public |
Apache OpenNLP jars and basic English language models.
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2023-06-16 |
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r-openintro
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Supplemental functions and data for 'OpenIntro' resources, which includes open-source textbooks and resources for introductory statistics at <http://www.openintro.org>. The package contains data sets used in our open-source textbooks along with custom plotting functions for reproducing book figures. Note that many functions and examples include color transparency; some plotting elements may not show up properly (or at all) when run in some versions of Windows operating system.
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2023-06-16 |
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r-opalr
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public |
Data integration Web application for biobanks by 'OBiBa'. 'Opal' is the core database application for biobanks. Participant data, once collected from any data source, must be integrated and stored in a central data repository under a uniform model. 'Opal' is such a central repository. It can import, process, validate, query, analyze, report, and export data. 'Opal' is typically used in a research center to analyze the data acquired at assessment centres. Its ultimate purpose is to achieve seamless data-sharing among biobanks. This 'Opal' client allows to interact with 'Opal' web services and to perform operations on the R server side. 'DataSHIELD' administration tools are also provided.
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2023-06-16 |
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r-onetr
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Provides a series of functions designed to enable users to easily search and interact with occupational data from the O*NET API <www.onetonline.org>. The package produces parsed and listed XML data for custom interactions, or pre-packaged functions for easy extraction of specific data (e.g., Knowledge, Skills, Abilities, Work Styles, etc.).
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2023-06-16 |
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r-oncotree
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Contains functions to construct and evaluate directed tree structures that model the process of occurrence of genetic alterations during carcinogenesis.
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2023-06-16 |
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r-oarray
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Generalise the starting point of the array index.
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2023-06-16 |
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r-nso1212
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National Statistical Office of Mongolia (NSO) is the national statistical service and an organization of Mongolian government. NSO provides open access and official data via its web site <http://www.1212.mn/> and API <http://opendata.1212.mn/en/doc>. The package NSO1212 has functions for accessing the API service. The functions are compatible with the API v2.0 and get data sets and its detailed informations from the API.
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2023-06-16 |
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r-nps
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Small functions to make working with survey data in the context of a Net Promoter programme easier. Specifically, data transformation methods, some methods for examining the statistical properties of the NPS, such as its variance and standard errors, and some simple inferential testing procedures. Net Promoter and NPS are registered trademarks of Bain & Company, Satmetrix Systems and Fred Reichheld.
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2023-06-16 |
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r-nplr
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Performing drug response analyses and IC50 estimations using n-Parameter logistic regression. Can also be applied to proliferation analyses.
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2023-06-16 |
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r-nplplot
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public |
This package provides routines for plotting linkage and association results along a chromosome, with marker names displayed along the top border. There are also routines for generating BED and BedGraph custom tracks for viewing in the UCSC genome browser. The data reformatting program Mega2 uses this package to plot output from a variety of programs.
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2023-06-16 |
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r-npcd
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An array of nonparametric and parametric estimation methods for cognitive diagnostic models, including nonparametric classification of examinee attribute profiles, joint maximum likelihood estimation (JMLE) of examinee attribute profiles and item parameters, and nonparametric refinement of the Q-matrix, as well as conditional maximum likelihood estimation (CMLE) of examinee attribute profiles given item parameters and CMLE of item parameters given examinee attribute profiles. Currently the nonparametric methods in the package support both conjunctive and disjunctive models, and the parametric methods in the package support the DINA model, the DINO model, the NIDA model, the G-NIDA model, and the R-RUM model.
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2023-06-16 |
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r-nparcomp
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public |
With this package, it is possible to compute nonparametric simultaneous confidence intervals for relative contrast effects in the unbalanced one way layout. Moreover, it computes simultaneous p-values. The simultaneous confidence intervals can be computed using multivariate normal distribution, multivariate t-distribution with a Satterthwaite Approximation of the degree of freedom or using multivariate range preserving transformations with Logit or Probit as transformation function. 2 sample comparisons can be performed with the same methods described above. There is no assumption on the underlying distribution function, only that the data have to be at least ordinal numbers. See Konietschke et al. (2015) <doi:10.18637/jss.v064.i09> for details.
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2023-06-16 |
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r-notifyr
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This Package provides a connection to the pushover.net API to send push notification to your smartphone directly from R. (ACCOUNT REQUIRED!)
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2023-06-16 |
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r-nordklimdata1
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public |
The Nordklim dataset 1.0 is a unique and useful achievement for climate analysis. It includes observations of twelve different climate elements from more than 100 stations in the Nordic region, in time span over 100 years. The project contractors were NORDKLIM/NORDMET on behalf of the National meteorological services in Denmark (DMI), Finland (FMI), Iceland (VI), Norway (DNMI) and Sweden (SMHI).
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2023-06-16 |
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r-nontargetdata
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Data sets for isotope pattern grouping of LC-HRMS peaks with package nontarget. Based on a vast set of unique PubChem molecular formulas, quantized (a) m/z, (b) m/z differences, (c) intensity ratios and (d) marker centroids of simulated centroid pairs are listed for different instrument resolutions.
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2023-06-16 |
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r-noisyce2
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Cross-Entropy optimisation of unconstrained deterministic and noisy functions illustrated in Rubinstein and Kroese (2004, ISBN: 978-1-4419-1940-3) through a highly flexible and customisable function which allows user to define custom variable domains, sampling distributions, updating and smoothing rules, and stopping criteria. Several built-in methods and settings make the package very easy-to-use under standard optimisation problems.
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2023-06-16 |
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r-pins
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public |
Pin remote resources into a local cache to work offline, improve speed and avoid recomputing; discover and share resources in local folders, 'GitHub', 'Kaggle' or 'RStudio Connect'. Resources can be anything from 'CSV', 'JSON', or image files to arbitrary R objects.
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2023-06-16 |
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r-pinochet
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Packages data about the victims of the Pinochet regime as compiled by the Chilean National Commission for Truth and Reconciliation Report (1991, ISBN:9780268016463).
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2023-06-16 |
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r-phylogram
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Contains functions for developing phylogenetic trees as deeply-nested lists ("dendrogram" objects). Enables bi-directional conversion between dendrogram and "phylo" objects (see Paradis et al (2004) <doi:10.1093/bioinformatics/btg412>), and features several tools for command-line tree manipulation and import/export via Newick parenthetic text.
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2023-06-16 |
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r-phylogr
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Manipulation and analysis of phylogenetically simulated data sets and phylogenetically based analyses using GLS.
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2023-06-16 |
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r-petfinder
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Wrapper of the 'Petfinder API' <https://www.petfinder.com/developers/v2/docs/> that implements methods for interacting with and extracting data from the 'Petfinder' database. The 'Petfinder REST API' allows access to the 'Petfinder' database, one of the largest online databases of adoptable animals and animal welfare organizations across North America.
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2023-06-16 |
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r-pco
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Computation of the Pedroni (1999) panel cointegration test statistics. Reported are the empirical and the standardized values.
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2023-06-16 |
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r-patchsynctex
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public |
This utility eases the debugging of literate documents ('noweb' files) by patching the synchronization information (the '.synctex(.gz)' file) produced by 'pdflatex' with concordance information produced by 'Sweave' or 'knitr' and 'Sweave' or 'knitr' ; this allows for bilateral communication between a text editor (visualizing the 'noweb' source) and a viewer (visualizing the resultant 'PDF'), thus bypassing the intermediate 'TeX' file.
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2023-06-16 |
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r-pact
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public |
A prediction-based approach to the analysis of data from randomized clinical trials is implemented. Based on response and covariate data from a randomized clinical trial comparing a new experimental treatment E versus a control C, the objective is to develop and internally validate a model that can identify subjects likely to benefit from E rather than C. Currently, survival and binary response types are permitted.
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2023-06-16 |
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r-pacman
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public |
Tools to more conveniently perform tasks associated with add-on packages. pacman conveniently wraps library and package related functions and names them in an intuitive and consistent fashion. It seeks to combine functionality from lower level functions which can speed up workflow.
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2023-06-16 |
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r-order2parent
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This package uses B-spline based nonparametric smooth estimators to estimate parent distributions given observations on multiple order statistics.
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2023-06-16 |
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r-optimaldesign
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public |
Algorithms for D-, A- and IV-optimal designs of experiments. Some of the functions in this package require the 'gurobi' software and its accompanying R package. For their installation, please follow the instructions at <www.gurobi.com> and the file gurobi_inst.txt, respectively.
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2023-06-16 |
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r-okcupiddata
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Cleaned profile data from "OkCupid Profile Data for Introductory Statistics and Data Science Courses" (Journal of Statistics Education 2015 <http://www.amstat.org/publications/jse/v23n2/kim.pdf>).
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2023-06-16 |
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r-odb
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public |
This package provides functions to create, connect, update and query HSQL databases embedded in Open Document Databases (.odb) files, as OpenOffice and LibreOffice do.
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2023-06-16 |
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r-ocp
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public |
Implements the Bayesian online changepoint detection method by Adams and MacKay (2007) <arXiv:0710.3742> for univariate or multivariate data. Gaussian and Poisson probability models are implemented. Provides post-processing functions with alternative ways to extract changepoints.
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2023-06-16 |
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r-npexact
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public |
Provides several novel exact hypothesis tests with minimal assumptions on the errors. The tests are exact, meaning that their p-values are correct for the given sample sizes (the p-values are not derived from asymptotic analysis). The test for stochastic inequality is for ordinal comparisons based on two independent samples and requires no assumptions on the errors. The other tests include tests for the mean and variance of a single sample and comparing means in independent samples. All these tests only require that the data has known bounds (such as percentages that lie in [0,100]. These bounds are part of the input.
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2023-06-16 |
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r-nortest
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Five omnibus tests for testing the composite hypothesis of normality.
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2023-06-16 |
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r-nor1mix
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public |
Onedimensional Normal (i.e. Gaussian) Mixture Models Classes, for, e.g., density estimation or clustering algorithms research and teaching; providing the widely used Marron-Wand densities. Efficient random number generation and graphics. Fitting to data by efficient ML (Maximum Likelihood) or traditional EM estimation.
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2023-06-16 |
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r-phylin
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public |
The spatial interpolation of genetic distances between samples is based on a modified kriging method that accepts a genetic distance matrix and generates a map of probability of lineage presence. This package also offers tools to generate a map of potential contact zones between groups with user-defined thresholds in the tree to account for old and recent divergence. Additionally, it has functions for IDW interpolation using genetic data and midpoints.
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2023-06-16 |
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r-pear
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public |
Package for estimating periodic autoregressive models. Datasets: monthly ozone and Fraser riverflow. Plots: periodic versions of boxplot, auto/partial correlations, moving-average expansion.
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2023-06-16 |
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r-peacots
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public |
Calculates the periodogram of a time series, maximum-likelihood fits an Ornstein-Uhlenbeck state space (OUSS) null model and evaluates the statistical significance of periodogram peaks against the OUSS null hypothesis. The OUSS is a parsimonious model for stochastically fluctuating variables with linear stabilizing forces, subject to uncorrelated measurement errors. Contrary to the classical white noise null model for detecting cyclicity, the OUSS model can account for temporal correlations typically occurring in ecological and geological time series.
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2023-06-16 |
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r-pass.lme
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Power and sample size calculation for testing fixed effect coefficients in multilevel linear mixed effect models with one or more than one independent populations. Laird, Nan M. and Ware, James H. (1982) <doi:10.2307/2529876>.
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2023-06-16 |
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r-partsm
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This package performs basic functions to fit and predict periodic autoregressive time series models. These models are discussed in the book P.H. Franses (1996) "Periodicity and Stochastic Trends in Economic Time Series", Oxford University Press. Data set analyzed in that book is also provided. NOTE: the package was orphaned during several years. It is now only maintained, but no major enhancement are expected, and the maintainer cannot provide any support.
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2023-06-16 |
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r-paramtest
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Run simulations or other functions while easily varying parameters from one iteration to the next. Some common use cases would be grid search for machine learning algorithms, running sets of simulations (e.g., estimating statistical power for complex models), or bootstrapping under various conditions. See the 'paramtest' documentation for more information and examples.
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2023-06-16 |
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r-palr
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public |
Colour palettes for data, based on some well known public data sets.
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2023-06-16 |
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r-palasso
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Implements sparse regression with paired covariates (Rauschenberger et al. 2019). For the optional shrinkage, install ashr (<https://github.com/stephens999/ashr>) and CorShrink (<https://github.com/kkdey/CorShrink>) from GitHub (see README).
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2023-06-16 |
