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r-argparser
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Cross-platform command-line argument parser written purely in R with no external dependencies. It is useful with the Rscript front-end and facilitates turning an R script into an executable script.
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2025-04-22 |
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r-argosfilter
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Functions to filters animal satellite tracking data obtained from Argos. It is especially indicated for telemetry studies of marine animals, where Argos locations are predominantly of low-quality.
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2025-04-22 |
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r-argonr
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R wrapper around the argon HTML library. More at <https://demos.creative-tim.com/argon-design-system/>.
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2025-04-22 |
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r-argo
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Augmented Regression with General Online data (ARGO) for accurate estimation of influenza epidemics in United States on both national level and regional level. It replicates the method introduced in paper Yang, S., Santillana, M. and Kou, S.C. (2015) <doi:10.1073/pnas.1515373112> and Ning, S., Yang, S. and Kou, S.C. (2019) <doi:10.1038/s41598-019-41559-6>.
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2025-04-22 |
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r-areaplot
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Plot stacked areas and confidence bands as filled polygons, or add polygons to existing plots. A variety of input formats are supported, including vectors, matrices, data frames, formulas, etc.
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2025-04-22 |
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r-ardec
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Package ArDec implements autoregressive-based decomposition of a time series based on the constructive approach in West (1997). Particular cases include the extraction of trend and seasonal components.
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2025-04-22 |
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r-arco
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Set of functions to analyse and estimate Artificial Counterfactual models from Carvalho, Masini and Medeiros (2016) <DOI:10.2139/ssrn.2823687>.
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2025-04-22 |
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r-archdata
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The archdata package provides several types of data that are typically used in archaeological research. It provides all of the data sets used in "Quantitative Methods in Archaeology Using R" by David L Carlson, one of the Cambridge Manuals in Archaeology.
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2025-04-22 |
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r-ararredux
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Processes noble gas mass spectrometer data to determine the isotopic composition of argon (comprised of Ar36, Ar37, Ar38, Ar39 and Ar40) released from neutron-irradiated potassium-bearing minerals. Then uses these compositions to calculate precise and accurate geochronological ages for multiple samples as well as the covariances between them. Error propagation is done in matrix form, which jointly treats all samples and all isotopes simultaneously at every step of the data reduction process. Includes methods for regression of the time-resolved mass spectrometer signals to t=0 ('time zero') for both single- and multi-collector instruments, blank correction, mass fractionation correction, detector intercalibration, decay corrections, interference corrections, interpolation of the irradiation parameter between neutron fluence monitors, and (weighted mean) age calculation. All operations are performed on the logs of the ratios between the different argon isotopes so as to properly treat them as 'compositional data', sensu Aitchison [1986, The Statistics of Compositional Data, Chapman and Hall].
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2025-04-22 |
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r-arabicstemr
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Allows users to stem Arabic texts for text analysis.
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2025-04-22 |
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r-apsrtable
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Formats latex tables from one or more model objects side-by-side with standard errors below, not unlike tables found in such journals as the American Political Science Review.
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2025-04-22 |
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r-apsimbatch
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Run APSIM in Batch mode
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2025-04-22 |
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r-aprof
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Assists the evaluation of whether and where to focus code optimization, using Amdahl's law and visual aids based on line profiling. Amdahl's profiler organizes profiling output files (including memory profiling) in a visually appealing way. It is meant to help to balance development vs. execution time by helping to identify the most promising sections of code to optimize and projecting potential gains. The package is an addition to R's standard profiling tools and is not a wrapper for them.
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2025-04-22 |
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r-aprean3
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An unofficial companion to the textbook "Applied Regression Analysis" by N.R. Draper and H. Smith (3rd Ed., 1998) including all the accompanying datasets.
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2025-04-22 |
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r-approxmatch
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Tools for constructing a matched design with multiple comparison groups. Further specifications of refined covariate balance restriction and exact match on covariate can be imposed. Matches are approximately optimal in the sense that the cost of the solution is at most twice the optimal cost, Crama and Spieksma (1992) <doi:10.1016/0377-2217(92)90078-N>.
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2025-04-22 |
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r-appnn
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Amyloid propensity prediction neural network (APPNN) is an amyloidogenicity propensity predictor based on a machine learning approach through recursive feature selection and feed-forward neural networks, taking advantage of newly published sequences with experimental, in vitro, evidence of amyloid formation.
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2025-04-22 |
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r-apng
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Convert several png files into an animated png file. This package exports only a single function `apng'. Call the apng function with a vector of file names (which should be png files) to convert them to a single animated png file.
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2025-04-22 |
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r-aplpack
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Some functions for drawing some special plots: The function 'bagplot' plots a bagplot, 'faces' plots chernoff faces, 'iconplot' plots a representation of a frequency table or a data matrix, 'plothulls' plots hulls of a bivariate data set, 'plotsummary' plots a graphical summary of a data set, 'puticon' adds icons to a plot, 'skyline.hist' combines several histograms of a one dimensional data set in one plot, 'slider' functions supports some interactive graphics, 'spin3R' helps an inspection of a 3-dim point cloud, 'stem.leaf' plots a stem and leaf plot, 'stem.leaf.backback' plots back-to-back versions of stem and leaf plot.
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2025-04-22 |
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r-aplore3
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An unofficial companion to "Applied Logistic Regression" by D.W. Hosmer, S. Lemeshow and R.X. Sturdivant (3rd ed., 2013) containing the dataset used in the book.
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2025-04-22 |
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r-apfr
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Implements a multiple testing approach to the choice of a threshold gamma on the p-values using the Average Power Function (APF) and Bayes False Discovery Rate (FDR) robust estimation. Function apf_fdr() estimates both quantities from either raw data or p-values. Function apf_plot() produces smooth graphs and tables of the relevant results. Details of the methods can be found in Quatto P, Margaritella N, et al. (2019) <doi:10.1177/0962280219844288>.
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2025-04-22 |
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r-apercu
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The goal is to print an "aperçu", a short view of a vector, a matrix, a data.frame, a list or an array. By default, it prints the first 5 elements of each dimension. By default, the number of columns is equal to the number of lines. If you want to control the selection of the elements, you can pass a list, with each element being a vector giving the selection for each dimension.
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2025-04-22 |
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r-apdesign
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An implementation of the additive polynomial (AP) design matrix. It constructs and appends an AP design matrix to a data frame for use with longitudinal data subject to seasonality.
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2025-04-22 |
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r-apcanalysis
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Analysis of data from unreplicated orthogonal experiments
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2025-04-22 |
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r-apc
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Functions for age-period-cohort analysis. The data can be organised in matrices indexed by age-cohort, age-period or cohort-period. The data can include dose and response or just doses. The statistical model is a generalized linear model (GLM) allowing for 3,2,1 or 0 of the age-period-cohort factors. The canonical parametrisation of Kuang, Nielsen and Nielsen (2008) <DOI:10.1093/biomet/asn026> is used. Thus, the analysis does not rely on ad hoc identification.
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2025-04-22 |
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r-apachelogprocessor
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Provides capabilities to process Apache HTTPD Log files.The main functionalities are to extract data from access and error log files to data frames.
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2025-04-22 |
