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r-rip46
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Utility functions and S3 classes for IPv4 and IPv6 addresses, including conversion to and from binary representation.
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2025-04-22 |
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r-rinsp
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Functions to calculate several ecological indices of individual and population niche width (Araujo's E, clustering and pairwise similarity among individuals, IS, Petraitis' W, and Roughgarden's WIC/TNW) to assess individual specialization based on data of resource use. Resource use can be quantified by counts of categories, measures of mass/lenght or proportions. Monte Carlo resampling procedures are available for hypothesis testing against multinomial null models.
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2025-04-22 |
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r-rinside
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C++ classes to embed R in C++ applications A C++ class providing the R interpreter is offered by this package making it easier to have "R inside" your C++ application. As R itself is embedded into your application, a shared library build of R is required. This works on Linux, OS X and even on Windows provided you use the same tools used to build R itself. d Numerous examples are provided in the eight subdirectories of the examples/ directory of the installed package: standard, 'mpi' (for parallel computing), 'qt' (showing how to embed 'RInside' inside a Qt GUI application), 'wt' (showing how to build a "web-application" using the Wt toolkit), 'armadillo' (for 'RInside' use with 'RcppArmadillo') and 'eigen' (for 'RInside' use with 'RcppEigen'). The examples use 'GNUmakefile(s)' with GNU extensions, so a GNU make is required (and will use the 'GNUmakefile' automatically). 'Doxygen'-generated documentation of the C++ classes is available at the 'RInside' website as well.
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2025-04-22 |
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r-ring
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Circular / ring buffers in R and C. There are a couple of different buffers here with different implementations that represent different trade-offs.
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2025-04-22 |
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r-ridge
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public |
Linear and logistic ridge regression functions. Additionally includes special functions for genome-wide single-nucleotide polymorphism (SNP) data.
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2025-04-22 |
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r-ri2by2
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Computes attributable effects based confidence interval, permutation test confidence interval, or asymptotic confidence interval for the the average treatment effect on a binary outcome.
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2025-04-22 |
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r-rhpcblasctl
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public |
Control the number of threads on 'BLAS' (Aka 'GotoBLAS', 'OpenBLAS', 'ACML', 'BLIS' and 'MKL'). And possible to control the number of threads in 'OpenMP'. Get a number of logical cores and physical cores if feasible.
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2025-04-22 |
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r-rhli
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Complete access from 'R' to the FIS 'MarketMap C-Toolkit' ('FAME C-HLI'). 'FAME' is a fully integrated software and database management system from FIS that provides the following capabilities: Time series and cross-sectional data management; Financial calculation, data analysis, econometrics, and forecasting; Table generation and detailed multicolor, presentation-quality report writing; Multicolor, presentation-quality graphics; "What-if" analysis; Application development and structured programming; Data transfer to and from other applications; Tools for building customized graphical user interfaces.
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2025-04-22 |
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r-rgeos
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Interface to Geometry Engine - Open Source ('GEOS') using the C 'API' for topology operations on geometries. The 'GEOS' library is external to the package, and, when installing the package from source, must be correctly installed first. Windows and Mac Intel OS X binaries are provided on 'CRAN'. ('rgeos' >= 0.5-1): Up to and including 'GEOS' 3.7.1, topological operations succeeded with some invalid geometries for which the same operations fail from and including 'GEOS' 3.7.2. The 'checkValidity=' argument defaults and structure have been changed, from default FALSE to integer default '0L' for 'GEOS' < 3.7.2 (no check), '1L' 'GEOS' >= 3.7.2 (check and warn). A value of '2L' is also provided that may be used, assigned globally using 'set_RGEOS_CheckValidity(2L)', or locally using the 'checkValidity=2L' argument, to attempt zero-width buffer repair if invalid geometries are found. The previous default (FALSE, now '0L') is fastest and used for 'GEOS' < 3.7.2, but will not warn users of possible problems before the failure of topological operations that previously succeeded.
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2025-04-22 |
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r-rgeode
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Provides the hybrid Bayesian method Geometric Density Estimation. On the one hand, it scales the dimension of our data, on the other it performs inference. The method is fully described in the paper "Scalable Geometric Density Estimation" by Y. Wang, A. Canale, D. Dunson (2016) <http://proceedings.mlr.press/v51/wang16e.pdf>.
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2025-04-22 |
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r-rgenoud
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A genetic algorithm plus derivative optimizer.
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2025-04-22 |
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r-rgbm
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Provides an implementation of Regularized LS-TreeBoost & LAD-TreeBoost algorithm for Regulatory Network inference from any type of expression data (Microarray/RNA-seq etc). See Mall et al (2017) <doi:10.1101/132670>.
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2025-04-22 |
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r-rgb
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Classes and methods to efficiently handle (slice, annotate, draw ...) genomic features (such as genes or transcripts), and an interactive interface to browse them.
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2025-04-22 |
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r-rforensicbatwing
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A modified version (with great help from Ian J. Wilson) of Ian J. Wilson's program BATWING for calculating forensic trace-suspect match probabilities.
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2025-04-22 |
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r-rfit
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R estimation and inference for linear models. Estimation is for general scores and a library of commonly used score functions is included.
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2025-04-22 |
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r-rferns
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Provides the random ferns classifier by Ozuysal, Calonder, Lepetit and Fua (2009) <doi:10.1109/TPAMI.2009.23>, modified for generic and multi-label classification and featuring OOB error approximation and importance measure as introduced in Kursa (2014) <doi:10.18637/jss.v061.i10>.
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2025-04-22 |
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r-rexpokit
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Wraps some of the matrix exponentiation utilities from EXPOKIT (<http://www.maths.uq.edu.au/expokit/>), a FORTRAN library that is widely recommended for matrix exponentiation (Sidje RB, 1998. "Expokit: A Software Package for Computing Matrix Exponentials." ACM Trans. Math. Softw. 24(1): 130-156). EXPOKIT includes functions for exponentiating both small, dense matrices, and large, sparse matrices (in sparse matrices, most of the cells have value 0). Rapid matrix exponentiation is useful in phylogenetics when we have a large number of states (as we do when we are inferring the history of transitions between the possible geographic ranges of a species), but is probably useful in other ways as well.
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2025-04-22 |
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r-rexperigen
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Provides convenience functions to communicate with an Experigen server: Experigen (<http://github.com/aquincum/experigen>) is an online framework for creating linguistic experiments, and it stores the results on a dedicated server. This package can be used to retrieve the results from the server, and it is especially helpful with registered experiments, as authentication with the server has to happen.
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2025-04-22 |
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r-retimes
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Reaction time analysis by maximum likelihood
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2025-04-22 |
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r-restrictedmvn
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A fast Gibbs sampler for multivariate normal with affine constraints.
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2025-04-22 |
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r-resemble
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Implementation of functions for spectral similarity/dissimilarity analysis and memory-based learning (MBL) for non-linear modeling in complex spectral datasets. In chemometrics MBL is also known as local modeling.
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2025-04-22 |
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r-repolr
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Fits linear models to repeated ordinal scores using GEE methodology.
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2025-04-22 |
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r-repfdr
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Estimation of Bayes and local Bayes false discovery rates for replicability analysis (Heller & Yekutieli, 2014 <doi:10.1214/13-AOAS697> ; Heller at al., 2015 <doi: 10.1093/bioinformatics/btu434>).
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2025-04-22 |
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r-reordercluster
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Tools for performing the leaf reordering for the dendrogram that preserves the hierarchical clustering result and at the same time tries to group instances from the same class together.
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2025-04-22 |
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r-remmap
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remMap is developed for fitting multivariate response regression models under the high-dimension-low-sample-size setting
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2025-04-22 |
