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r-invlt
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Provides two functions for the numerical inversion of Laplace-Transformed functions, returning the value of the standard (time) domain function at a specified value. The first algorithm is the first optimum contour algorithm described by Evans and Chung (2000)[1]. The second algorithm uses the Bromwich contour as per the definition of the inverse Laplace Transform. The latter is unstable for numerical inversion and mainly included for comparison or interest. There are also some additional functions provided for utility, including plotting and some simple Laplace Transform examples, for which there are known analytical solutions. Polar-cartesian conversion functions are included in this package and are used by the inversion functions. [1] Evans & Chung, 2000: Laplace transform inversions using optimal contours in the complex plane; International Journal of Computer Mathematics v73 pp531-543.
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2023-06-16 |
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r-idendr0
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Interactive dendrogram that enables the user to select and color clusters, to zoom and pan the dendrogram, and to visualize the clustered data not only in a built-in heat map, but also in 'GGobi' interactive plots and user-supplied plots. This is a backport of Qt-based 'idendro' (<https://github.com/tsieger/idendro>) to base R graphics and Tcl/Tk GUI.
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2023-06-16 |
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r-ibdhaplortools
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public |
Functions to analyze, plot, and store the output of running IBD_Haplo software package. More information regarding IBD_Haplo can be found at http://www.stat.washington.edu/thompson/Genepi/pangaea.shtml.
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2023-06-16 |
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r-hydrogeo
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Contains one function for drawing Piper diagrams (also called Piper-Hill diagrams) of water analyses for major ions.
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2023-06-16 |
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r-holdem
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Simulates hands and tournaments of Texas Holdem, the most popular form of poker. For examples of probability problems involving Texas Holdem and a brief explanation of the game see Schoenberg, F. (2011). An Introduction to Probability with Texas Hold'em Examples. Taylor and Francis, New York, ISBN-13: 978-1439827680.
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2023-06-16 |
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r-hflights
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A data only package containing commercial domestic flights that departed Houston (IAH and HOU) in 2011.
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2023-06-16 |
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r-heatex
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The heatex package calculates heat storage in the body and the components of heat exchange (conductive, convective, radiative, and evaporative) between the body and the environment during physical activity based on the principles of partitional calorimetry. The program enables heat exchange calculations for a range of environmental conditions when wearing various clothing ensembles.
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2023-06-16 |
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r-gwrm
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Statistical functions to fit, validate and describe a Generalized Waring Regression Model (GWRM).
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2023-06-16 |
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r-gremlin
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Fit linear mixed-effects models using restricted (or residual) maximum likelihood (REML) and with generalized inverse matrices to specify covariance structures for random effects. In particular, the package is suited to fit quantitative genetic mixed models, often referred to as 'animal models' (Kruuk. 2004 <DOI: 10.1098/rstb.2003.1437>). Implements the average information algorithm as the main tool to maximize the restricted likelihood, but with other algorithms available (Meyer. 1997. Genet Sel Evol 29:97; Meyer and Smith. 1998. Genet Sel Evol 28:23.).
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2023-06-16 |
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r-greedyexperimentaldesignjars
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These are GreedyExperimentalDesign Java dependency libraries. Note: this package has no functionality of its own and should not be installed as a standalone package without GreedyExperimentalDesign.
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2023-06-16 |
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r-grapes
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Turn arbitrary functions into binary operators.
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2023-06-16 |
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r-glmsdata
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Data sets from the book Generalized Linear Models with Examples in R by Dunn and Smyth.
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2023-06-16 |
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r-gitlink
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Provides helpers to add 'Git' links to 'shiny' applications, 'rmarkdown' documents, and other 'HTML' based resources. This is most commonly used for 'GitHub' ribbons.
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2023-06-16 |
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r-giniwegneg
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Gini-based coefficients and plot of the ordinary and generalized curve of maximum inequality in the presence of weighted and negative attributes.
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2023-06-16 |
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r-geotools
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Tools
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2023-06-16 |
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r-geode
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Given expression data this package calculate a multivariate geometrical characterization of the differential expression and can also perform gene-set enrichment.
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2023-06-16 |
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r-geoboxplot
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Make geographic box plot as detailed in Willmott et al. (2007).
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2023-06-16 |
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r-gendata
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Set of functions to create datasets using a correlation matrix.
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2023-06-16 |
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r-lassosir
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Estimate the sufficient dimension reduction space using sparsed sliced inverse regression via Lasso (Lasso-SIR) introduced in Lin, Zhao, and Liu (2017) <arxiv:1611.06655>. The Lasso-SIR is consistent and achieve the optimal convergence rate under certain sparsity conditions for the multiple index models.
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2023-06-16 |
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r-kselection
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Selection of k in k-means clustering based on Pham et al. paper ``Selection of k in k-means clustering''.
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2023-06-16 |
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r-kriens
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Provides basic functions for Continuation-Passing Style development.
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2023-06-16 |
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r-komaletter
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An R Markdown template for writing beautiful yet versatile letters, using the 'KOMA-Script' letter class 'scrlttr2' and an adaptation of the 'pandoc-letter' template. 'scrlttr2' provides layouts for many different window envelope types and the possibility to define your own.
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2023-06-16 |
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r-knngarden
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Multi-distance based k-Nearest Neighbors Classification with K Threshold Value Check and Same K_i Problem Dealing, Missing Observations Filling
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2023-06-16 |
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r-keep
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Provides arrays with flexible control over dimension dropping when subscripting.
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2023-06-16 |
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r-irtrees
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Helper functions and example data sets accompanying De Boeck, P. and Partchev, I. (2012) IRTrees: Tree-Based Item Response Models of the GLMM Family, Journal of Statistical Software - Code Snippets, 48(1), 1-28.
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2023-06-16 |
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r-irr
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Coefficients of Interrater Reliability and Agreement for quantitative, ordinal and nominal data: ICC, Finn-Coefficient, Robinson's A, Kendall's W, Cohen's Kappa, ...
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2023-06-16 |
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r-irg
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Fits a double logistic function to NDVI time series and calculates instantaneous rate of green (IRG) according to methods described in Bischoff et al. (2012) <doi:10.1086/667590>.
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2023-06-16 |
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r-intlik
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This package calculates the integrated likelihood numerically. Given the Likelihood function and the prior function, this package integrates out the nuisance parameters by Metropolis-Hastings (MCMC) Algorithm.
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2023-06-16 |
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r-interva4
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Provides an R version of the 'InterVA4' software (<http://www.interva.net>) for coding cause of death from verbal autopsies. It also provides simple graphical representation of individual and population level statistics.
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2023-06-16 |
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r-interpretr
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Compute permutation- based performance measures and create partial dependence plots for (cross-validated) 'randomForest' and 'ada' models.
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2023-06-16 |
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r-instar
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Provides an interface to the Instagram API <https://instagram.com/ developer/>, which allows R users to download public pictures filtered by hashtag, popularity, user or location, and to access public users' profile data.
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2023-06-16 |
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r-insiderode
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insideRODE package includes buildin functions from deSolve, compiled functions from compiler, and C/FORTRAN code interfaces to nlme. It includes nlmLSODA, nlmODE, nlmVODE,nlmLSODE for general purpose; cfLSODA,cfLSODE, cfODE, cfVODE call C/FORTRAN compiled dll functions.ver2.0 add sink()function into example it helps to directly combine c/fortran source code in R files. Finally, with new compiler package, we generated compiled functions: nlmODEcp, nlmVODEcp, nlmLSODEcp,nlmLSODAcp and cpODE, cpLSODA, cpLSODE, cpVODE. They will help to increase speed.
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2023-06-16 |
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r-injector
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R dependency injection framework. Dependency injection allows a program design to follow the dependency inversion principle. The user delegates to external code (the injector) the responsibility of providing its dependencies. This separates the responsibilities of use and construction.
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2023-06-16 |
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r-inferference
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Provides methods for estimating causal effects in the presence of interference described in B. Saul and M. Hugdens (2017) <doi:10.18637/jss.v082.i02>. Currently it implements the inverse-probability weighted (IPW) estimators proposed by E.J. Tchetgen Tchetgen and T.J. Vanderweele (2012) <doi:10.1177/0962280210386779>.
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2023-06-16 |
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r-igsea
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To integrate multiple GSEA studies, we propose a hybrid strategy, iGSEA-AT, for choosing random effects (RE) versus fixed effect (FE) models, with an attempt to achieve the potential maximum statistical efficiency as well as stability in performance in various practical situations. In addition to iGSEA-AT, this package also provides options to perform integrative GSEA with testing based on a FE model (iGSEA-FE) and testing based on a RE model (iGSEA-RE). The approaches account for different set sizes when testing a database of gene sets. The function is easy to use, and the three approaches can be applied to both binary and continuous phenotypes.
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2023-06-16 |
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r-ids
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Generate random or human readable and pronounceable identifiers.
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2023-06-16 |
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r-idetect
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Provides efficient implementation of the Isolate-Detect methodology for the consistent estimation of the number and location of multiple change-points in one-dimensional data sequences from the "deterministic + noise" model. For details on the Isolate-Detect methodology, please see Anastasiou and Fryzlewicz (2018) <https://docs.wixstatic.com/ugd/24cdcc_6a0866c574654163b8255e272bc0001b.pdf>. Currently implemented scenarios are: piecewise-constant signal with Gaussian noise, piecewise-constant signal with heavy-tailed noise, continuous piecewise-linear signal with Gaussian noise, continuous piecewise-linear signal with heavy-tailed noise.
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2023-06-16 |
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r-iceinfer
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Given two unbiased samples of patient level data on cost and effectiveness for a pair of treatments, make head-to-head treatment comparisons by (i) generating the bivariate bootstrap resampling distribution of ICE uncertainty for a specified value of the shadow price of health, lambda, (ii) form the wedge-shaped ICE confidence region with specified confidence fraction within [0.50, 0.99] that is equivariant with respect to changes in lambda, (iii) color the bootstrap outcomes within the above confidence wedge with economic preferences from an ICE map with specified values of lambda, beta and gamma parameters, (iv) display VAGR and ALICE acceptability curves, and (v) illustrate variation in ICE preferences by displaying potentially non-linear indifference(iso-preference) curves from an ICE map with specified values of lambda, beta and either gamma or eta parameters.
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2023-06-16 |
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r-ibrokers
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Provides native R access to Interactive Brokers Trader Workstation API.
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2023-06-16 |
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r-hypersampleplan
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Implements an algorithm for efficient and exact calculation of hypergeometric and binomial probabilities using Chebyshev polynomials, while other algorithm use an approximation when N is large. A useful applications is also considered in this package for the construction of attribute sampling plans which is an important field of statistical quality control. The quantile, and the confidence limit for the attribute sampling plan are also implemented in this package. The hypergeometric distribution can be represented in terms of Chebyshev polynomials. This representation is particularly useful in the calculation of exact values of hypergeometric variables.
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2023-06-16 |
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r-humanize
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An almost direct port of the 'python' 'humanize' package <https://github.com/jmoiron/humanize>. This package contains utilities to convert values into human readable forms.
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2023-06-16 |
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r-hsaur
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Functions, data sets, analyses and examples from the book ''A Handbook of Statistical Analyses Using R'' (Brian S. Everitt and Torsten Hothorn, Chapman & Hall/CRC, 2006). The first chapter of the book, which is entitled ''An Introduction to R'', is completely included in this package, for all other chapters, a vignette containing all data analyses is available.
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2023-06-16 |
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r-hkclustering
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Implements an ensemble algorithm for clustering combining a k-means and a hierarchical clustering approach.
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2023-06-16 |
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r-historydata
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These sample data sets are intended for historians learning R. They include population, institutional, religious, military, and prosopographical data suitable for mapping, quantitative analysis, and network analysis.
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2023-06-16 |
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r-hellojavaworld
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A dummy package to demonstrate how to interface to a jar file that resides inside an R package.
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2023-06-16 |
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r-hail
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Read data from the City of Portland's 'HYDRA' <http://or.water.usgs.gov/precip/> rainfall datasets within R.
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2023-06-16 |
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r-gseg
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Using an approach based on similarity graph to estimate change-point(s) and the corresponding p-values. Can be applied to any type of data (high-dimensional, non-Euclidean, etc.) as long as a reasonable similarity measure is available.
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2023-06-16 |
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r-graphicsqc
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Functions to generate graphics files, compare them with "model" files, and report the results, including visual and textual diffs of any differences.
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2023-06-16 |
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r-gpca
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This package implements guided principal components analysis for the detection of batch effects in high-throughput data.
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2023-06-16 |
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r-gmdatabase
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A template for a geometallurgical database and a fast and easy interface for accessing it is provided in this package.
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2023-06-16 |
