|
r-cvxbiclustr
|
public |
An iterative algorithm for solving a convex formulation of the biclustering problem.
|
2025-04-22 |
|
r-cusumdesign
|
public |
Computation of decision intervals (H) and average run lengths (ARL) for CUSUM charts.
|
2025-04-22 |
|
r-cusum
|
public |
Provides functions for constructing and evaluating CUSUM charts and RA-CUSUM charts with focus on false signal probability.
|
2025-04-22 |
|
r-cusp
|
public |
Cobb's maximum likelihood method for cusp-catastrophe modeling (Grasman, van der Maas, & Wagenmakers, 2009, JSS, 32:8; Cobb, L, 1981, Behavioral Science, 26:1, 75--78). Includes a cusp() function for model fitting, and several utility functions for plotting, and for comparing the model to linear regression and logistic curve models.
|
2025-04-22 |
|
r-curstatci
|
public |
Computes the maximum likelihood estimator, the smoothed maximum likelihood estimator and pointwise bootstrap confidence intervals for the distribution function under current status data. Groeneboom and Hendrickx (2017) <doi:10.1214/17-EJS1345>.
|
2025-04-22 |
|
r-cold
|
public |
Performs regression analysis for longitudinal count data, allowing for serial dependence among observations from a given individual and two dimensional random effects on the linear predictor. Estimation is via maximization of the exact likelihood of a suitably defined model. Missing values and unbalanced data are allowed; M. Helena Goncalves et al.(2007) <doi:10.1016/j.csda.2007.03.002>.
|
2025-04-22 |
|
r-bedmatrix
|
public |
A matrix-like data structure that allows for efficient, convenient, and scalable subsetting of binary genotype/phenotype files generated by PLINK (<https://www.cog-genomics.org/plink2>), the whole genome association analysis toolset, without loading the entire file into memory.
|
2025-04-22 |
|
r-cump
|
public |
Combining Univariate Association Test Results of Multiple Phenotypes for Detecting Pleiotropy.
|
2025-04-22 |
|
r-cubeview
|
public |
Creates a 3D data cube view of a RasterStack/Brick, typically a collection/array of RasterLayers (along z-axis) with the same geographical extent (x and y dimensions) and resolution, provided by package 'raster'. Slices through each dimension (x/y/z), freely adjustable in location, are mapped to the visible sides of the cube. The cube can be freely rotated. Zooming and panning can be used to focus on different areas of the cube.
|
2025-04-22 |
|
r-cub
|
public |
For ordinal rating data, estimate and test models within the family of CUB models and their extensions (where CUB stands for Combination of a discrete Uniform and a shifted Binomial distributions). Simulation routines, plotting facilities and fitting measures are also provided.
|
2025-04-22 |
|
r-ctt
|
public |
A collection of common test and item analyses from a classical test theory (CTT) framework. Analyses can be applied to both dichotomous and polytomous data. Functions provide reliability analyses (alpha), item statistics, disctractor analyses, disattenuated correlations, scoring routines, and empirical ICCs.
|
2025-04-22 |
|
r-ctrlgene
|
public |
A simple way to assess the stability of candidate housekeeping genes is implemented in this package.
|
2025-04-22 |
|
r-ctrdata
|
public |
Provides functions for querying, retrieving and analysing protocol- and results-related information on clinical trials from two public registers, the European Union Clinical Trials Register (EUCTR, <https://www.clinicaltrialsregister.eu/>) and ClinicalTrials.gov (CTGOV, <https://clinicaltrials.gov/>). The information is transformed and then stored in a database (mongo). Functions are provided for accessing and analysing the locally stored information on the clinical trials, as well as for identifying duplicate records. The package is motivated by the need for aggregating and trend-analysing the design, conduct and outcomes across clinical trials.
|
2025-04-22 |
|
r-cthresher
|
public |
Estimation and inference methods for the continuous threshold expectile regression. It can fit the continuous threshold expectile regression and test the existence of change point, for the paper, "Feipeng Zhang and Qunhua Li (2016). A continuous threshold expectile regression, submitted."
|
2025-04-22 |
|
r-csvy
|
public |
Support for import from and export to the CSVY file format. CSVY is a file format that combines the simplicity of CSV (comma-separated values) with the metadata of other plain text and binary formats (JSON, XML, Stata, etc.) by placing a YAML header on top of a regular CSV.
|
2025-04-22 |
|
r-csv
|
public |
Reads and writes CSV with selected conventions. Uses the same generic function for reading and writing to promote consistent formats.
|
2025-04-22 |
|
r-cstar
|
public |
Functions that allow a researcher to examine the robustness of the substantive significance of their findings. Implements ideas set out in Esarey and Danneman (2014).
|
2025-04-22 |
|
r-cssam
|
public |
Cell-type specific differential expression of a microarray experiment of heterogeneous tissue samples, using SAM.
|
2025-04-22 |
|
r-csrplus
|
public |
Includes two functions to evaluate the hypothesis of complete spatial randomness (csr) in point processes. The function 'mwin' calculates quadrat counts to estimate the intensity of a spatial point process through the moving window approach proposed by Bailey and Gatrell (1995). Event counts are computed within a window of a set size over a fine lattice of points within the region of observation. The function 'pielou' uses the nearest neighbor test statistic and asymptotic distribution proposed by Pielou (1959) to compare the observed point process to one generated under csr. The value can be compared to that given by the more widely used test proposed by Clark and Evans (1954).
|
2025-04-22 |
|
r-csp
|
public |
Provides the Correlates of State Policy data set for easy use in R.
|
2025-04-22 |
|
r-csn
|
public |
Provides functions for computing the density and the log-likelihood function of closed-skew normal variates, and for generating random vectors sampled from this distribution. See Gonzalez-Farias, G., Dominguez-Molina, J., and Gupta, A. (2004). The closed skew normal distribution, Skew-elliptical distributions and their applications: a journey beyond normality, Chapman and Hall/CRC, Boca Raton, FL, pp. 25-42.
|
2025-04-22 |
|
r-cshapes
|
public |
Package for CShapes, a GIS dataset of country boundaries (1946-today). Includes functions for data extraction and the computation of distance matrices and -lists.
|
2025-04-22 |
|
r-cseqpat
|
public |
Mines contiguous sequential patterns in text.
|
2025-04-22 |
|
r-crwrm
|
public |
To re-calculate the coefficients and the standard deviation when changing the reference group.
|
2025-04-22 |
|
r-crtsize
|
public |
Sample size estimation in cluster (group) randomized trials. Contains traditional power-based methods, empirical smoothing (Rotondi and Donner, 2009), and updated meta-analysis techniques (Rotondi and Donner, 2012).
|
2025-04-22 |
