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r-igsea
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To integrate multiple GSEA studies, we propose a hybrid strategy, iGSEA-AT, for choosing random effects (RE) versus fixed effect (FE) models, with an attempt to achieve the potential maximum statistical efficiency as well as stability in performance in various practical situations. In addition to iGSEA-AT, this package also provides options to perform integrative GSEA with testing based on a FE model (iGSEA-FE) and testing based on a RE model (iGSEA-RE). The approaches account for different set sizes when testing a database of gene sets. The function is easy to use, and the three approaches can be applied to both binary and continuous phenotypes.
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2025-04-22 |
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r-igraphtosonia
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This program facilitates exporting igraph graphs to the SoNIA file format
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2025-04-22 |
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r-igraphinshiny
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Using 'shiny' to demo 'igraph' package makes learning graph theory easy and fun.
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2025-04-22 |
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r-igraphdata
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A small collection of various network data sets, to use with the 'igraph' package: the Enron email network, various food webs, interactions in the immunoglobulin protein, the karate club network, Koenigsberg's bridges, visuotactile brain areas of the macaque monkey, UK faculty friendship network, domestic US flights network, etc.
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2025-04-22 |
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r-igorr
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Provides function to read data from the 'Igor Pro' data analysis program by Wavemetrics. The data formats supported are 'Igor' packed experiment format (pxp) and 'Igor' binary wave (ibw). See: http://www.wavemetrics.com/ for details. Also includes functions to load special pxp files produced by the 'Igor Pro' 'Neuromatic' and 'Nclamp' packages for recording and analysing neuronal data. See http://www.neuromatic.thinkrandom.com/ for details.
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2025-04-22 |
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r-igasso
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A collection of statistical tests for genetic association studies.
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2025-04-22 |
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r-iemisctext
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The eclectic collection includes the following written pieces: "The War Prayer" by Mark Twain, "War Is A Racket" by Major General Smedley Butler, "The Mask of Anarchy: Written on the Occasion of the Massacre at Manchester" by Percy Bysshe Shelley, "Connect the D.O.T.S." by Obiora Embry, "Untitled: Climate Strange" by Irucka Ajani Embry, and "Untitled: Us versus Them or People Screwing over Other People (as we all live on one Earth and there is no "us versus them" in the actual Ultimate Reality}" by Irucka Ajani Embry.
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2025-04-22 |
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r-iemiscdata
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Miscellaneous data sets [Engineering Economics, Environmental/ Water Resources Engineering, US Presidential Elections].
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2025-04-22 |
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r-idx2r
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Convert files to and from IDX format to vectors, matrices and arrays. IDX is a very simple file format designed for storing vectors and multidimensional matrices in binary format. The format is described on the website from Yann LeCun <http://yann.lecun.com/exdb/mnist/>.
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2025-04-22 |
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r-ids
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Generate random or human readable and pronounceable identifiers.
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2025-04-22 |
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r-idr
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This is a package for estimating the copula mixture model and plotting correspondence curves in "Measuring reproducibility of high-throughput experiments" (2011), Annals of Applied Statistics, Vol. 5, No. 3, 1752-1779, by Li, Brown, Huang, and Bickel
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2025-04-22 |
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r-idmining
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Contains techniques for mining large and high-dimensional data sets by using the concept of Intrinsic Dimension (ID). Here the ID is not necessarily an integer. It is extended to fractal dimensions. And the Morisita estimator is used for the ID estimation, but other tools are included as well.
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2025-04-22 |
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r-idiogramfish
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Plot idiograms of several karyotypes having a set of dataframes for chromosome data and optionally mark data. Includes also a function to plot holocentrics and its marks supporting micrometers and Mb. Marks can have square or dot form, its legend (label) can be drawn inline or to the right of karyotypes. It is possible to calculate chromosome indices by Levan et al. (1964) <doi:10.1111/j.1601-5223.1964.tb01953.x> , karyotype indices of Watanabe et al. (1999) <doi:10.1007/PL00013869> and Romero-Zarco (1986) <doi:10.2307/1221906> and classify chromosomes by morphology Guerra (1986) and Levan et al. (1964).
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2025-04-22 |
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r-idetect
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Provides efficient implementation of the Isolate-Detect methodology for the consistent estimation of the number and location of multiple change-points in one-dimensional data sequences from the "deterministic + noise" model. For details on the Isolate-Detect methodology, please see Anastasiou and Fryzlewicz (2018) <https://docs.wixstatic.com/ugd/24cdcc_6a0866c574654163b8255e272bc0001b.pdf>. Currently implemented scenarios are: piecewise-constant signal with Gaussian noise, piecewise-constant signal with heavy-tailed noise, continuous piecewise-linear signal with Gaussian noise, continuous piecewise-linear signal with heavy-tailed noise.
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2025-04-22 |
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r-idendr0
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Interactive dendrogram that enables the user to select and color clusters, to zoom and pan the dendrogram, and to visualize the clustered data not only in a built-in heat map, but also in 'GGobi' interactive plots and user-supplied plots. This is a backport of Qt-based 'idendro' (<https://github.com/tsieger/idendro>) to base R graphics and Tcl/Tk GUI.
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2025-04-22 |
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r-idcard
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The digits of the old version (before 2000 year) of 'Chinese ID Card Number' is 15, this package aims to update to the current version of 18 digits. Besides, this package can help check whether the given 'ID' is right or not.
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2025-04-22 |
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r-idbg
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An interactive R debugger
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2025-04-22 |
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r-icv
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Functions for computing the global and local Gaussian density estimates based on the ICV bandwidth. See the article of Savchuk, O.Y., Hart, J.D., Sheather, S.J. (2010). Indirect cross-validation for density estimation. Journal of the American Statistical Association, 105(489), 415-423 <doi:10.1198/jasa.2010.tm08532>.
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2025-04-22 |
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r-icsw
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Provides the necessary tools to estimate average treatment effects with an instrumental variable by re-weighting observations using a model of compliance.
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2025-04-22 |
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r-icpsrdata
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Reproducible, programmatic retrieval of datasets from the Inter-university Consortium for Political and Social Research archive.
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2025-04-22 |
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r-icods
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Sieve semiparametric likelihood methods for analyzing interval-censored failure time data from an outcome-dependent sampling (ODS) design and from a case-cohort design. Zhou, Q., Cai, J., and Zhou, H. (2018) <doi:10.1111/biom.12744>; Zhou, Q., Zhou, H., and Cai, J. (2017) <doi:10.1093/biomet/asw067>.
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2025-04-22 |
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r-icluster
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Integrative clustering of multiple genomic data types using a joint latent variable model.
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2025-04-22 |
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r-iciter
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A minimal wrapper around the NIH's 'iCite' API (<https://icite.od.nih.gov/api>). Given a vector of pubmed IDs, this package returns a dataframe of the information yielded by the 'iCite' API. The primary metric yielded by 'iCite' is the paper's relative citation ratio, but the API also returns other meta-data from the paper, including author names, publication journal, publication year, paper title, doi, and a number of other citation metrics.
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2025-04-22 |
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r-icge
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ICGE is a package that helps to estimate the number of real clusters in data as well as to identify atypical units. The underlying methods are based on distances rather than on unit x variables.
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2025-04-22 |
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r-icesvocab
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R interface to access the RECO POX web services of the ICES (International Council for the Exploration of the Sea) Vocabularies database <https://vocab.ices.dk/services/POX.aspx>.
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2025-04-22 |
