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r_test / packages

Package Name Access Summary Updated
r-tfdatasets public Interface to 'TensorFlow' Datasets, a high-level library for building complex input pipelines from simple, re-usable pieces. See <https://www.tensorflow.org/programmers_guide/datasets> for additional details. 2025-04-22
r-textutils public Utilities for handling character vectors that store human-readable text (either plain or with markup, such as HTML or LaTeX). The package provides, in particular, functions that help with the preparation of plain-text reports (e.g. for expanding and aligning strings that form the lines of such reports); the package also provides generic functions for transforming R objects to HTML and to plain text. 2025-04-22
r-textshape public Tools that can be used to reshape and restructure text data. 2025-04-22
r-textrank public The 'textrank' algorithm is an extension of the 'Pagerank' algorithm for text. The algorithm allows to summarize text by calculating how sentences are related to one another. This is done by looking at overlapping terminology used in sentences in order to set up links between sentences. The resulting sentence network is next plugged into the 'Pagerank' algorithm which identifies the most important sentences in your text and ranks them. In a similar way 'textrank' can also be used to extract keywords. A word network is constructed by looking if words are following one another. On top of that network the 'Pagerank' algorithm is applied to extract relevant words after which relevant words which are following one another are combined to get keywords. More information can be found in the paper from Mihalcea, Rada & Tarau, Paul (2004) <http://www.aclweb.org/anthology/W04-3252>. 2025-04-22
r-textometry public Statistical exploration of textual corpora using several methods from French 'Textometrie' (new name of 'Lexicometrie') and French 'Data Analysis' schools. It includes methods for exploring irregularity of distribution of lexicon features across text sets or parts of texts (Specificity analysis); multi-dimensional exploration (Factorial analysis), etc. Those methods are used in the TXM software. 2025-04-22
r-textile public Contains real images of the same textile material with/without local defects, which were used in Bui and Apley (2017) <doi:10.1080/00401706.2017.1302362>. 2025-04-22
r-textgrid public The software application Praat can be used to annotate waveform data (e.g., to mark intervals of interest or to label events). (See <http://www.fon.hum.uva.nl/praat/> for more information about Praat.) These annotations are stored in a Praat TextGrid object, which consists of a number of interval tiers and point tiers. An interval tier consists of sequential (i.e., not overlapping) labeled intervals. A point tier consists of labeled events that have no duration. The 'textgRid' package provides S4 classes, generics, and methods for accessing information that is stored in Praat TextGrid objects. 2025-04-22
r-texreg public Converts coefficients, standard errors, significance stars, and goodness-of-fit statistics of statistical models into LaTeX tables or HTML tables/MS Word documents or to nicely formatted screen output for the R console for easy model comparison. A list of several models can be combined in a single table. The output is highly customizable. New model types can be easily implemented. 2025-04-22
r-testscorer public GUI for entering test items and obtaining raw and transformed scores. The results are shown on the console and can be saved to a tabular text file for further statistical analysis. The user can define his own tests and scoring procedures through a GUI. 2025-04-22
r-testingsimilarity public Provides a bootstrap test which decides whether two dose response curves can be assumed as equal concerning their maximum absolute deviation. A plenty of choices for the model types are available, which can be found in the 'DoseFinding' package, which is used for the fitting of the models. See <doi:10.1080/01621459.2017.1281813> for details. 2025-04-22
r-testfunctions public Test functions are often used to test computer code. They are used in optimization to test algorithms and in metamodeling to evaluate model predictions. This package provides test functions that can be used for any purpose. Some functions are taken from <https://www.sfu.ca/~ssurjano>, but their R code is not used. 2025-04-22
r-tester public tester allows you to test characteristics of common R objects. 2025-04-22
r-testequavar public Tests the hypothesis that variances are homogeneous or not using bootstrap. The procedure uses a variance-based statistic, and is derived from a normal-theory test. The test equivalently expressed the hypothesis as a function of the log contrasts of the population variances. A box-type acceptance region is constructed to test the hypothesis. See Cahoy (2010) <doi:10.1016/j.csda.2010.04.012>. 2025-04-22
r-testdriver public Provides data sets for teaching statistics and data science courses. It includes a sample of data from John Edmund Kerrich's famous coinflip experiment. These are data that I use for teaching SOC 4015 / SOC 5050 at Saint Louis University (SLU). The package also contains an R Markdown template with the required formatting for assignments in my courses SOC 4015, SOC 4650, SOC 5050, and SOC 5650 at SLU. 2025-04-22
r-testassay public A common way of validating a biological assay for is through a procedure, where m levels of an analyte are measured with n replicates at each level, and if all m estimates of the coefficient of variation (CV) are less than some prespecified level, then the assay is declared validated for precision within the range of the m analyte levels. Two limitations of this procedure are: there is no clear statistical statement of precision upon passing, and it is unclear how to modify the procedure for assays with constant standard deviation. We provide tools to convert such a procedure into a set of m hypothesis tests. This reframing motivates the m:n:q procedure, which upon completion delivers a 100q% upper confidence limit on the CV. Additionally, for a post-validation assay output of y, the method gives an ``effective standard deviation interval'' of log(y) plus or minus r, which is a 68% confidence interval on log(mu), where mu is the expected value of the assay output for that sample. Further, the m:n:q procedure can be straightforwardly applied to constant standard deviation assays. We illustrate these tools by applying them to a growth inhibition assay. 2025-04-22
r-ternvis public A suite of functions for visualising ternary probabilistic forecasts, as discussed in the paper by Jupp (2012) <doi:10.1098/rsta.2011.0350>. 2025-04-22
r-ternary public Plots ternary diagrams using the standard graphics functions. An alternative to 'ggtern', which uses the 'ggplot2' family of plotting functions. 2025-04-22
r-teraplusb public This package is for the comparison of various types of A+B escalation rules for dose finding trials. 2025-04-22
r-teqr public The TEQR package contains software to calculate the operating characteristics for the TEQR and the ACT designs.The TEQR (toxicity equivalence range) design is a toxicity based cumulative cohort design with added safety rules. The ACT (Activity constrained for toxicity) design is also a cumulative cohort design with additional safety rules. The unique feature of this design is that dose is escalated based on lack of activity rather than on lack of toxicity and is de-escalated only if an unacceptable level of toxicity is experienced. 2025-04-22
r-tensr public A collection of functions for Kronecker structured covariance estimation and testing under the array normal model. For estimation, maximum likelihood and Bayesian equivariant estimation procedures are implemented. For testing, a likelihood ratio testing procedure is available. This package also contains additional functions for manipulating and decomposing tensor data sets. This work was partially supported by NSF grant DMS-1505136. Details of the methods are described in Gerard and Hoff (2015) <doi:10.1016/j.jmva.2015.01.020> and Gerard and Hoff (2016) <doi:10.1016/j.laa.2016.04.033>. 2025-04-22
r-tensorr public Provides methods to manipulate and store sparse tensors. Tensors are multidimensional generalizations of matrices (two dimensional) and vectors (one dimensional). 2025-04-22
r-tensor public The tensor product of two arrays is notionally an outer product of the arrays collapsed in specific extents by summing along the appropriate diagonals. 2025-04-22
r-tenispolar public Implementation of ZENIT-POLAR substitution cipher method of encryption using by default the TENIS-POLAR cipher. This last cipher of encryption became famous through the collection of Brazilian books "Os Karas" by the author Pedro Bandeira. For more details, see "A Cryptographic Dictionary" (GC&CS, 1944). 2025-04-22
r-tempr public Analysis and visualization of data from temporal sensory methods, including for temporal check-all-that-apply (TCATA) and temporal dominance of sensations (TDS). 2025-04-22
r-tempor public TEMPO (TEmporal Modeling of Pathway Outliers) is a pathway-based outlier detection approach for finding pathways showing significant changes in temporal expression patterns across conditions. Given a gene expression data set where each sample is characterized by an age or time point as well as a phenotype (e.g. control or disease), and a collection of gene sets or pathways, TEMPO ranks each pathway by a score that characterizes how well a partial least squares regression (PLSR) model can predict age as a function of gene expression in the controls and how poorly that same model performs in the disease. TEMPO v1.0.3 is described in Pietras (2018) <doi:10.1145/3233547.3233559>. 2025-04-22

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