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r-taipan
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A tool to help create shiny apps for selecting and annotating elements of images. Users must supply images, questions, and answer choices. The user interface is a dynamic shiny app, that displays the images and questions and answer choices. The data generated can be saved to a file that can be used for subsequent analysis. The original purpose was to annotate still images from tennis video for face recognition and emotion detection purposes.
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2024-01-16 |
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r-tandem
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A two-stage regression method that can be used when various input data types are correlated, for example gene expression and methylation in drug response prediction. In the first stage it uses the upstream features (such as methylation) to predict the response variable (such as drug response), and in the second stage it uses the downstream features (such as gene expression) to predict the residuals of the first stage. In our manuscript (Aben et al., 2016, <doi:10.1093/bioinformatics/btw449>), we show that using TANDEM prevents the model from being dominated by gene expression and that the features selected by TANDEM are more interpretable.
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2024-01-16 |
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r-tailloss
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public |
Set of tools to estimate the probability in the upper tail of the aggregate loss distribution using different methods: Panjer recursion, Monte Carlo simulations, Markov bound, Cantelli bound, Moment bound, and Chernoff bound.
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2024-01-16 |
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r-tactile
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public |
Extensions to 'lattice', providing new high-level functions, methods for existing functions, panel functions, and a theme.
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2024-01-16 |
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r-tabusearch
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public |
Tabu search algorithm for binary configurations. A basic version of the algorithm as described by Fouskakis and Draper (2007) <doi:10.1111/j.1751-5823.2002.tb00174.x>.
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2024-01-16 |
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r-tab
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public |
Contains functions for creating various types of summary tables, e.g. comparing characteristics across levels of a categorical variable and summarizing fitted generalized linear models, generalized estimating equations, and Cox proportional hazards models. Functions are available to handle data from simple random samples as well as complex surveys.
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2024-01-16 |
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r-tabulog
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public |
Convert semi-structured log files (such as 'Apache' access.log files) into a tabular format (data.frame) using a standard template system.
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2024-01-16 |
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r-tabletolongform
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public |
A wrapper to a set of algorithms designed to recognise positional cues present in hierarchical for-human Tables (which would normally be interpreted visually by the human brain) to decompose, then reconstruct the data into machine-readable LongForm Dataframes.
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2024-01-16 |
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r-syuzhet
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public |
Extracts sentiment and sentiment-derived plot arcs from text using a variety of sentiment dictionaries conveniently packaged for consumption by R users. Implemented dictionaries include "syuzhet" (default) developed in the Nebraska Literary Lab "afinn" developed by Finn Årup Nielsen, "bing" developed by Minqing Hu and Bing Liu, and "nrc" developed by Mohammad, Saif M. and Turney, Peter D. Applicable references are available in README.md and in the documentation for the "get_sentiment" function. The package also provides a hack for implementing Stanford's coreNLP sentiment parser. The package provides several methods for plot arc normalization.
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2024-01-16 |
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r-tableone
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public |
Creates 'Table 1', i.e., description of baseline patient characteristics, which is essential in every medical research. Supports both continuous and categorical variables, as well as p-values and standardized mean differences. Weighted data are supported via the 'survey' package.
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2024-01-16 |
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r-tablerdash
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public |
'R' interface to the 'Tabler' HTML template. See more here <https://tabler.io>. 'tablerDash' is a light 'Bootstrap 4' dashboard template. There are different layouts available such as a one page dashboard or a multi page template, where the navigation menu is contained in the navigation bar. A fancy example is available at <https://dgranjon.shinyapps.io/shinyMons/>.
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2024-01-16 |
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r-tablemonster
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public |
Provides a user friendly interface to generation of booktab style tables using 'xtable'.
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2024-01-16 |
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r-tablehtml
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public |
A tool to create and style HTML tables with CSS. These can be exported and used in any application that accepts HTML (e.g. 'shiny', 'rmarkdown', 'PowerPoint'). It also provides functions to create CSS files (which also work with shiny).
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2024-01-16 |
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r-tablematrix
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public |
Provides two classes extending 'data.table' class. Simple 'tableList' class wraps 'data.table' and any additional structures together. More complex 'tableMatrix' class combines 'data.table' and 'matrix'. See <http://github.com/InferenceTechnologies/tableMatrix> for more information and examples.
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2024-01-16 |
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r-table1
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public |
Create HTML tables of descriptive statistics, as one would expect to see as the first table (i.e. "Table 1") in a medical/epidemiological journal article.
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2024-01-16 |
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r-table1heatmap
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public |
Table 1 is the classical way to describe the patients in a clinical study. The amount of splits in the data in such a table is limited. Table1Heatmap draws a heatmap of all crosstables that can be generated with the data. Users can choose between showing the actual crosstables or direction of effect of associations, and highlight associations by number of patients or p-values. v1.2 - fixed "missing "no visible global function definition for .."
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2024-01-16 |
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r-tablaxlsx
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public |
For writing tables with custom formats in a Excel file ready to be distributed.
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2024-01-16 |
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r-syslognet
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public |
Send 'syslog' protocol messages to a remote 'syslog' server specified by host name and TCP network port.
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2024-01-16 |
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r-t2eq
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public |
Contains functions for applying the T^2-test for equivalence. The T^2-test for equivalence is a multivariate two-sample equivalence test. Distance measure of the test is the Mahalanobis distance. For multivariate normally distributed data the T^2-test for equivalence is exact and UMPI. The function T2EQ() implements the T^2-test for equivalence according to Wellek (2010) <DOI:10.1201/ebk1439808184>. The function T2EQ.dissolution.profiles.hoffelder() implements a variant of the T^2-test for equivalence according to Hoffelder (2016) <http://www.ecv.de/suse_item.php?suseId=Z|pi|8430> for the equivalence comparison of highly variable dissolution profiles.
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2024-01-16 |
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r-synthpop
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A tool for producing synthetic versions of microdata containing confidential information so that they are safe to be released to users for exploratory analysis. The key objective of generating synthetic data is to replace sensitive original values with synthetic ones causing minimal distortion of the statistical information contained in the data set. Variables, which can be categorical or continuous, are synthesised one-by-one using sequential modelling. Replacements are generated by drawing from conditional distributions fitted to the original data using parametric or classification and regression trees models. Data are synthesised via the function syn() which can be largely automated, if default settings are used, or with methods defined by the user. Optional parameters can be used to influence the disclosure risk and the analytical quality of the synthesised data. For a description of the implemented method see Nowok, Raab and Dibben (2016) <doi:10.18637/jss.v074.i11>.
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2024-01-16 |
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r-systemfit
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public |
Econometric estimation of simultaneous systems of linear and nonlinear equations using Ordinary Least Squares (OLS), Weighted Least Squares (WLS), Seemingly Unrelated Regressions (SUR), Two-Stage Least Squares (2SLS), Weighted Two-Stage Least Squares (W2SLS), and Three-Stage Least Squares (3SLS) as suggested, e.g., by Zellner (1962) <doi:10.2307/2281644>, Zellner and Theil (1962) <doi:10.2307/1911287>, and Schmidt (1990) <doi:10.1016/0304-4076(90)90127-F>.
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2024-01-16 |
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r-synth
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public |
Implements the synthetic control group method for comparative case studies as described in Abadie and Gardeazabal (2003) and Abadie, Diamond, and Hainmueller (2010, 2011, 2014). The synthetic control method allows for effect estimation in settings where a single unit (a state, country, firm, etc.) is exposed to an event or intervention. It provides a data-driven procedure to construct synthetic control units based on a weighted combination of comparison units that approximates the characteristics of the unit that is exposed to the intervention. A combination of comparison units often provides a better comparison for the unit exposed to the intervention than any comparison unit alone.
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2024-01-16 |
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r-symmoments
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Symbolic central and non-central moments of the multivariate normal distribution. Computes a standard representation, LateX code, and values at specified mean and covariance matrices.
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2024-01-16 |
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r-sylly.en
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Adds support for the English language to the 'sylly' package. Due to some restrictions on CRAN, the full package sources are only available from the project homepage. To ask for help, report bugs, suggest feature improvements, or discuss the global development of the package, please consider subscribing to the koRpus-dev mailing list (<http://korpusml.reaktanz.de>).
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2024-01-16 |
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r-syntaxr
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public |
A set of functions for generating 'SPSS' syntax files from the R environment.
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2024-01-16 |
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r-syncmove
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The function 'syncSubsample' subsamples temporal data of different entities so that the result only contains synchronal events. The function 'mci' calculates the Movement Coordination Index (MCI, see reference on help page for function 'mci') of a data set created with the function 'syncSubsample'.
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2024-01-16 |
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r-synchrony
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public |
Methods for computing spatial, temporal, and spatiotemporal statistics as described in Gouhier and Guichard (2014) <doi:10.1111/2041-210X.12188>. These methods include empirical univariate, bivariate and multivariate variograms; fitting variogram models; phase locking and synchrony analysis; generating autocorrelated and cross-correlated matrices.
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2024-01-16 |
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r-sym.arma
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public |
Functions for fitting the Autoregressive and Moving Average Symmetric Model for univariate time series introduced by Maior and Cysneiros (2018), <doi:10.1007/s00362-016-0753-z>. Fitting method: conditional maximum likelihood estimation. For details see: Wei (2006), Time Series Analysis: Univariate and Multivariate Methods, Section 7.2.
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2024-01-16 |
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r-sweep
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public |
Tidies up the forecasting modeling and prediction work flow, extends the 'broom' package with 'sw_tidy', 'sw_glance', 'sw_augment', and 'sw_tidy_decomp' functions for various forecasting models, and enables converting 'forecast' objects to "tidy" data frames with 'sw_sweep'.
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2024-01-16 |
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r-swimplot
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public |
Used for creating swimmers plots with functions to customize the bars, add points, add lines, add text, and add arrows.
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2024-01-16 |
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r-sylly
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public |
Provides the hyphenation algorithm used for 'TeX'/'LaTeX' and similar software, as proposed by Liang (1983, <https://tug.org/docs/liang/>). Mainly contains the function hyphen() to be used for hyphenation/syllable counting of text objects. It was originally developed for and part of the 'koRpus' package, but later released as a separate package so it's lighter to have this particular functionality available for other packages. Support for various languages needs be added on-the-fly or by plugin packages (<https://undocumeantit.github.io/repos/>); this package does not include any language specific data. Due to some restrictions on CRAN, the full package sources are only available from the project homepage. To ask for help, report bugs, request features, or discuss the development of the package, please subscribe to the koRpus-dev mailing list (<http://korpusml.reaktanz.de>).
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2024-01-16 |
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r-svdialogs
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public |
Quickly construct standard dialog boxes for your GUI, including message boxes, input boxes, list, file or directory selection, ... In case R cannot display GUI dialog boxes, a simpler command line version of these interactive elements is also provided as fallback solution.
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2024-01-16 |
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r-switchr
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public |
Provides an abstraction for managing, installing, and switching between sets of installed R packages. This allows users to maintain multiple package libraries simultaneously, e.g. to maintain strict, package-version-specific reproducibility of many analyses, or work within a development/production release paradigm. Introduces a generalized package installation process which supports multiple repository and non-repository sources and tracks package provenance.
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2024-01-16 |
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r-swissair
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public |
Ozone, NOx (= Sum of nitrogen monoxide and nitrogen dioxide), nitrogen monoxide, ambient temperature, dew point, wind speed and wind direction at 3 sites around lake of Lucerne in Central Switzerland in 30 min time resolution for year 2004.
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2024-01-16 |
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r-swirl
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public |
Use the R console as an interactive learning environment. Users receive immediate feedback as they are guided through self-paced lessons in data science and R programming.
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2024-01-16 |
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r-swdft
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public |
Implements the Sliding Window Discrete Fourier Transform (SWDFT). Also provides statistical methods based on the SWDFT, and graphical tools to display the outputs.
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2024-01-16 |
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r-sweidnumbr
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Structural handling of identity numbers used in the Swedish administration such as personal identity numbers ('personnummer') and organizational identity numbers ('organisationsnummer').
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2024-01-16 |
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r-swagger
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public |
A collection of 'HTML', 'JavaScript', and 'CSS' assets that dynamically generate beautiful documentation from a 'Swagger' compliant API: <https://swagger.io/specification/>.
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2024-01-16 |
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r-swcrtdesign
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A set of tools for examining the design and analysis aspects of stepped wedge cluster randomized trials (SW CRT) based on a repeated cross-sectional sampling scheme (Hussey MA and Hughes JP (2007) Contemporary Clinical Trials 28:182-191. <doi:10.1016/j.cct.2006.05.007>).
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2024-01-16 |
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r-svunit
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public |
A complete unit test system and functions to implement its GUI part.
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2024-01-16 |
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r-svsweave
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public |
Functions to enumerate and reference figures, tables and equations in R Markdown documents that do not support these features (thus not 'bookdown' or 'quarto'. Supporting functions for using 'Sweave' and 'Knitr' with 'LyX'.
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2024-01-16 |
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r-svs
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Various tools for semantic vector spaces, such as correspondence analysis (simple, multiple and discriminant), latent semantic analysis, probabilistic latent semantic analysis, non-negative matrix factorization, latent class analysis, EM clustering, logratio analysis and log-multiplicative (association) analysis. Furthermore, there are specialized distance measures, plotting functions and some helper functions.
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2024-01-16 |
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r-susier
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Implements methods for variable selection in linear regression based on the "Sum of Single Effects" (SuSiE) model, as described in Wang et al (2020) <DOI:10.1101/501114> and Zou et al (2021) <DOI:10.1101/2021.11.03.467167>. These methods provide simple summaries, called "Credible Sets", for accurately quantifying uncertainty in which variables should be selected. The methods are motivated by genetic fine-mapping applications, and are particularly well-suited to settings where variables are highly correlated and detectable effects are sparse. The fitting algorithm, a Bayesian analogue of stepwise selection methods called "Iterative Bayesian Stepwise Selection" (IBSS), is simple and fast, allowing the SuSiE model be fit to large data sets (thousands of samples and hundreds of thousands of variables).
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2024-01-16 |
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r-svn
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Determines networks of significant synchronization between the discrete states of nodes; see Tumminello et al <doi:10.1371/journal.pone.0017994>.
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2024-01-16 |
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r-svmpath
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Computes the entire regularization path for the two-class svm classifier with essentially the same cost as a single SVM fit.
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2024-01-16 |
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r-svmisc
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Miscellaneous functions for 'SciViews' or general use: manage a temporary environment attached to the search path for temporary variables you do not want to save() or load(), test if 'Aqua', 'Mac', 'Win', ... Show progress bar, etc.
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2024-01-16 |
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r-survminer
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Contains the function 'ggsurvplot()' for drawing easily beautiful and 'ready-to-publish' survival curves with the 'number at risk' table and 'censoring count plot'. Other functions are also available to plot adjusted curves for `Cox` model and to visually examine 'Cox' model assumptions.
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2024-01-16 |
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r-svgui
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The 'SciViews' 'svGUI' package eases the management of Graphical User Interfaces (GUI) in R. It is independent from any particular GUI widgets ('Tk', 'Gtk2', native, ...). It centralizes info about GUI elements currently used, and it dispatches GUI calls to the particular toolkits in use in function of the context (is R run at the terminal, within a 'Tk' application, a HTML page?).
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2024-01-16 |
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r-svgpanzoom
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This 'htmlwidget' provides pan and zoom interactivity to R graphics, including 'base', 'lattice', and 'ggplot2'. The interactivity is provided through the 'svg-pan-zoom.js' library. Various options to the widget can tailor the pan and zoom experience to nearly any user desire.
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2024-01-16 |
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r-svenssonm
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Obtain parameters of Svensson's Method, including percentage agreement, systematic change and individual change. Also, the contingency table can be generated. Svensson's Method is a rank-invariant nonparametric method for the analysis of ordered scales which measures the level of change both from systematic and individual aspects. For the details, please refer to Svensson E. Analysis of systematic and random differences between paired ordinal categorical data [dissertation]. Stockholm: Almqvist & Wiksell International; 1993.
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2024-01-16 |
