|
r-wisam
|
public |
In the course of a genome-wide association study, the situation often arises that some phenotypes are known with greater precision than others. It could be that some individuals are known to harbor more micro-environmental variance than others. In the case of inbred strains of model organisms, it could be the case that more organisms were observed from some strains than others, so the strains with more organisms have better-estimated means. Package 'wISAM' handles this situation by allowing for weighting of each observation according to residual variance. Specifically, the 'weight' parameter to the function conduct_scan() takes the precision of each observation (one over the variance).
|
2024-01-16 |
|
r-wildpoker
|
public |
Provides insight into how the best hand for a poker game changes based on the game dealt, players who stay in until the showdown and wildcards added to the base game. At this time the package does not support player tactics, so draw poker variants are not included.
|
2024-01-16 |
|
r-wildcard
|
public |
Generate data frames from templates.
|
2024-01-16 |
|
r-wikitaxa
|
public |
'Taxonomic' information from 'Wikipedia', 'Wikicommons', 'Wikispecies', and 'Wikidata'. Functions included for getting taxonomic information from each of the sources just listed, as well performing taxonomic search.
|
2024-01-16 |
|
r-wikipedir
|
public |
A wrapper for the MediaWiki API, aimed particularly at the Wikimedia 'production' wikis, such as Wikipedia. It can be used to retrieve page text, information about users or the history of pages, and elements of the category tree.
|
2024-01-16 |
|
r-wikifacts
|
public |
Query Wikidata and get facts from current and historic Wikipedia main pages.
|
2024-01-16 |
|
r-wikidatar
|
public |
Read from, interogate, and write to Wikidata <https://www.wikidata.org> - the multilingual, interdisciplinary, semantic knowledgebase. Includes functions to: read from wikidata (single items, properties, or properties); query wikidata (retrieving all items that match a set of criterial via Wikidata SPARQL query service); write to Wikidata (adding new items or statements via QuickStatements); and handle and manipulate Wikidata objects (as lists and tibbles). Uses the Wikidata and Quickstatements APIs.
|
2024-01-16 |
|
r-wikidataqueryservicer
|
public |
An API client for the 'Wikidata Query Service' <https://query.wikidata.org/>.
|
2024-01-16 |
|
r-wikibooks
|
public |
The german Wikibook "GNU R" introduces R to new users. This package is a collection of functions and datas used in the german WikiBook "GNU R".
|
2024-01-16 |
|
r-widgetframe
|
public |
Provides two functions 'frameableWidget()', and 'frameWidget()'. The 'frameableWidget()' is used to add extra code to a 'htmlwidget' which allows is to be rendered correctly inside a responsive 'iframe'. The 'frameWidget()' is a 'htmlwidget' which displays content of another 'htmlwidget' inside a responsive 'iframe'. These functions allow for easier embedding of 'htmlwidgets' in content management systems such as 'wordpress', 'blogger' etc. They also allow for separation of widget content from main HTML content where CSS of the main HTML could interfere with the widget.
|
2024-01-16 |
|
r-whitening
|
public |
Implements the whitening methods (ZCA, PCA, Cholesky, ZCA-cor, and PCA-cor) discussed in Kessy, Lewin, and Strimmer (2018) "Optimal whitening and decorrelation", <doi:10.1080/00031305.2016.1277159>, as well as the whitening approach to canonical correlation analysis allowing negative canonical correlations described in Jendoubi and Strimmer (2019) "A whitening approach to probabilistic canonical correlation analysis for omics data integration", <doi:10.1186/s12859-018-2572-9>. The package also offers functions to simulate random orthogonal matrices, compute (correlation) loadings and explained variation. It also contains four example data sets (extended UCI wine data, TCGA LUSC data, nutrimouse data, extended pitprops data).
|
2024-01-16 |
|
r-whoami
|
public |
Look up the username and full name of the current user, the current user's email address and 'GitHub' username, using various sources of system and configuration information.
|
2024-01-16 |
|
r-whitechapelr
|
public |
Provides a set of functions to make tracking the hidden movements of the 'Jack' player easier. By tracking every possible path Jack might have traveled from the point of the initial murder including special movement such as through alleyways and via carriages, the police can more accurately narrow the field of their search. Additionally, by tracking all possible hideouts from round to round, rounds 3 and 4 should have a vastly reduced field of search.
|
2024-01-16 |
|
r-whisker
|
None |
Implements 'Mustache' logicless templating.
|
2024-01-16 |
|
r-wemix
|
public |
Run mixed-effects models that include weights at every level. The WeMix package fits a weighted mixed model, also known as a multilevel, mixed, or hierarchical linear model (HLM). The weights could be inverse selection probabilities, such as those developed for an education survey where schools are sampled probabilistically, and then students inside of those schools are sampled probabilistically. Although mixed-effects models are already available in R, WeMix is unique in implementing methods for mixed models using weights at multiple levels. Both linear and logit models are supported. Models may have up to three levels. Random effects are estimated using the PIRLS algorithm from 'lme4pureR' (Walker and Bates (2013) <https://github.com/lme4/lme4pureR>).
|
2024-01-16 |
|
r-whereami
|
public |
Robust and reliable functions to return informative outputs to console with the run or source location of a command. This can be from the 'RScript'/R terminal commands or 'RStudio' console, source editor, 'Rmarkdown' document and a Shiny application.
|
2024-01-16 |
|
r-wheatmap
|
public |
Builds complex plots, heatmaps in particular, using natural semantics. Bigger plots can be assembled using directives such as 'LeftOf', 'RightOf', 'TopOf', and 'Beneath' and more. Other features include clustering, dendrograms and integration with 'ggplot2' generated grid objects. This package is particularly designed for bioinformaticians to assemble complex plots for publication.
|
2024-01-16 |
|
r-weightr
|
public |
Estimates the Vevea and Hedges (1995) weight-function model. By specifying arguments, users can also estimate the modified model described in Vevea and Woods (2005), which may be more practical with small datasets. Users can also specify moderators to estimate a linear model. The package functionality allows users to easily extract the results of these analyses as R objects for other uses. In addition, the package includes a function to launch both models as a Shiny application. Although the Shiny application is also available online, this function allows users to launch it locally if they choose.
|
2024-01-16 |
|
r-wgteff
|
public |
Functions for determining the effect of data weights on the variance of survey data: users will load a data set which has a weights column, and the package will calculate the design effect (DEFF), weighting loss, root design effect (DEFT), effective sample size (ESS), and/or weighted margin of error.
|
2024-01-16 |
|
r-wfg
|
public |
Implementation of Weighted Fast Greedy algorithm for community detection in networks with mixed types of attributes.
|
2024-01-16 |
|
r-weightit
|
public |
Generates balancing weights for causal effect estimation in observational studies with binary, multi-category, or continuous point or longitudinal treatments by easing and extending the functionality of several R packages and providing in-house estimation methods. Available methods include propensity score weighting using generalized linear models, gradient boosting machines, the covariate balancing propensity score algorithm, Bayesian additive regression trees, and SuperLearner, and directly estimating balancing weights using entropy balancing, energy balancing, and optimization-based weights. Also allows for assessment of weights and checking of covariate balance by interfacing directly with the 'cobalt' package. See the vignette "Installing Supporting Packages" for instructions on how to install any package 'WeightIt' uses, including those that may not be on CRAN.
|
2024-01-16 |
|
r-wesanderson
|
public |
Palettes generated mostly from 'Wes Anderson' movies.
|
2024-01-16 |
|
r-webshot2
|
public |
Takes screenshots of web pages, including Shiny applications and R Markdown documents. 'webshot2' uses headless Chrome or Chromium as the browser back-end.
|
2024-01-16 |
|
r-welchadf
|
public |
Implementation of Johansen's general formulation of Welch-James's statistic with Approximate Degrees of Freedom, which makes it suitable for testing any linear hypothesis concerning cell means in univariate and multivariate mixed model designs when the data pose non-normality and non-homogeneous variance. Some improvements, namely trimmed means and Winsorized variances, and bootstrapping for calculating an empirical critical value, have been added to the classical formulation. The code departs from a previous SAS implementation by L.M. Lix and H.J. Keselman, available at <http://supp.apa.org/psycarticles/supplemental/met_13_2_110/SAS_Program.pdf> and published in Keselman, H.J., Wilcox, R.R., and Lix, L.M. (2003) <DOI:10.1111/1469-8986.00060>.
|
2024-01-16 |
|
r-weirs
|
public |
Provides computational support for flow over weirs, such as sharp-crested, broad-crested, and embankments. Initially, the package supports broad- and sharp-crested weirs.
|
2024-01-16 |
|
r-webr
|
public |
Several analysis-related functions for the book entitled "Web-based Analysis without R in Your Computer"(written in Korean, ISBN 978-89-5566-185-9) by Keon-Woong Moon. The main function plot.htest() shows the distribution of statistic for the object of class 'htest'.
|
2024-01-16 |
|
r-weightquant
|
public |
Estimation of observation-specific weights for incomplete longitudinal data and bootstrap procedure for weighted quantile regressions. See Jacqmin-Gadda, Rouanet, Mba, Philipps, Dartigues (2020) for details <doi:10.1177/0962280220909986>.
|
2024-01-16 |
|
r-weightedroc
|
public |
Fast computation of Receiver Operating Characteristic (ROC) curves and Area Under the Curve (AUC) for weighted binary classification problems (weights are example-specific cost values).
|
2024-01-16 |
|
r-weightedporttest
|
public |
An implementation of the Weighted Portmanteau Tests described in "New Weighted Portmanteau Statistics for Time Series Goodness-of-Fit Testing" published by the Journal of the American Statistical Association, Volume 107, Issue 498, pages 777-787, 2012.
|
2024-01-16 |
|
r-webpower
|
public |
This is a collection of tools for conducting both basic and advanced statistical power analysis including correlation, proportion, t-test, one-way ANOVA, two-way ANOVA, linear regression, logistic regression, Poisson regression, mediation analysis, longitudinal data analysis, structural equation modeling and multilevel modeling. It also serves as the engine for conducting power analysis online at <https://webpower.psychstat.org>.
|
2024-01-16 |
|
r-weighted.desc.stat
|
public |
Weighted descriptive statistics is the discipline of quantitatively describing the main features of real-valued fuzzy data which usually given from a fuzzy population. One can summarize this special kind of fuzzy data numerically or graphically using this package. To interpret some of the properties of one or several sets of real-valued fuzzy data, numerically summarize is possible by some weighted statistics which are designed in this package such as mean, variance, covariance and correlation coefficent. Also, graphically interpretation can be given by weighted histogram and weighted scatter plot using this package to describe properties of real-valued fuzzy data set.
|
2024-01-16 |
|
r-weibullness
|
public |
Performs a goodness-of-fit test for Weibull distribution (weibullness test) and provides the parameter estimates of the two- and three-parameter Weibull distributions. Note that the threshold parameter is estimated based on the correlation from the Weibull plot. For more details, see <doi:10.23055/ijietap.2017.24.4.2848>, <doi:10.1155/2018/6056975>, and <doi:10.3390/math11143156>. This work was supported by the National Research Foundation of Korea (NRF) grant funded by the Korea government (MSIT) (No. 2022R1A2C1091319, RS-2023-00242528).
|
2024-01-16 |
|
r-webexercises
|
public |
Functions for easily creating interactive web pages using 'R Markdown' that students can use in self-guided learning.
|
2024-01-16 |
|
r-webshot
|
public |
Takes screenshots of web pages, including Shiny applications and R Markdown documents.
|
2024-01-16 |
|
r-websearchr
|
public |
Functions that allow for accessing domains and a number of search engines.
|
2024-01-16 |
|
r-webmockr
|
public |
Stubbing and setting expectations on 'HTTP' requests. Includes tools for stubbing 'HTTP' requests, including expected request conditions and response conditions. Match on 'HTTP' method, query parameters, request body, headers and more. Can be used for unit tests or outside of a testing context.
|
2024-01-16 |
|
r-webdriver
|
public |
A client for the 'WebDriver' 'API'. It allows driving a (probably headless) web browser, and can be used to test web applications, including 'Shiny' apps. In theory it works with any 'WebDriver' implementation, but it was only tested with 'PhantomJS'.
|
2024-01-16 |
|
r-wdpar
|
public |
Fetch and clean data from the World Database on Protected Areas (WDPA) and the World Database on Other Effective Area-Based Conservation Measures (WDOECM). Data is obtained from Protected Planet <https://www.protectedplanet.net/en>. To augment data cleaning procedures, users can install the 'prepr' R package (available at <https://github.com/dickoa/prepr>). For more information on this package, see Hanson (2022) <doi:10.21105/joss.04594>.
|
2024-01-16 |
|
r-wdman
|
public |
There are a number of binary files associated with the 'Webdriver'/'Selenium' project. This package provides functions to download these binaries and to manage processes involving them.
|
2024-01-16 |
|
r-webchem
|
public |
Chemical information from around the web. This package interacts with a suite of web services for chemical information. Sources include: Alan Wood's Compendium of Pesticide Common Names, Chemical Identifier Resolver, ChEBI, Chemical Translation Service, ChemSpider, ETOX, Flavornet, NIST Chemistry WebBook, OPSIN, PubChem, SRS, Wikidata.
|
2024-01-16 |
|
r-waterfalls
|
public |
A not uncommon task for quants is to create 'waterfall charts'. There seems to be no simple way to do this in 'ggplot2' currently. This package contains a single function (waterfall) that simply draws a waterfall chart in a 'ggplot2' object. Some flexibility is provided, though often the object created will need to be modified through a theme.
|
2024-01-16 |
|
r-weathermetrics
|
public |
Functions to convert between weather metrics, including conversions for metrics of temperature, air moisture, wind speed, and precipitation. This package also includes functions to calculate the heat index from air temperature and air moisture.
|
2024-01-16 |
|
r-wbstats
|
public |
Search and download data from the World Bank Data API.
|
2024-01-16 |
|
r-wakefield
|
public |
Generates random data sets including: data.frames, lists, and vectors.
|
2024-01-16 |
|
r-wdi
|
public |
Search and download data from over 40 databases hosted by the World Bank, including the World Development Indicators ('WDI'), International Debt Statistics, Doing Business, Human Capital Index, and Sub-national Poverty indicators.
|
2024-01-16 |
|
r-wce
|
public |
A flexible method for modeling cumulative effects of time-varying exposures, weighted according to their relative proximity in time, and represented by time-dependent covariates. The current implementation estimates the weight function in the Cox proportional hazards model. The function that assigns weights to doses taken in the past is estimated using cubic regression splines.
|
2024-01-16 |
|
r-waveletcomp
|
public |
Wavelet analysis and reconstruction of time series, cross-wavelets and phase-difference (with filtering options), significance with simulation algorithms.
|
2024-01-16 |
|
r-waved
|
public |
Makes available code necessary to reproduce figures and tables in papers on the WaveD method for wavelet deconvolution of noisy signals as presented in The WaveD Transform in R, Journal of Statistical Software Volume 21, No. 3, 2007.
|
2024-01-16 |
|
r-wateryeartype
|
public |
Provides Water Year Hydrologic Classification Indices based on measured unimpaired runoff (in million acre-feet). Data is provided by California Department of Water Resources and subject to revision.
|
2024-01-16 |
|
r-waterfall
|
public |
Provides support for creating waterfall charts in R using both traditional base and lattice graphics.
|
2024-01-16 |
