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r-monitor
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public |
Acoustic template detection and monitoring database interface. Create, modify, save, and use templates for detection of animal vocalizations. View, verify, and extract results. Upload a MySQL schema to a existing instance, manage survey metadata, write and read templates and detections locally or to the database.
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2024-01-16 |
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r-modistsp
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Allows automating the creation of time series of rasters derived from MODIS satellite land products data. It performs several typical preprocessing steps such as download, mosaicking, reprojecting and resizing data acquired on a specified time period. All processing parameters can be set using a user-friendly GUI. Users can select which layers of the original MODIS HDF files they want to process, which additional quality indicators should be extracted from aggregated MODIS quality assurance layers and, in the case of surface reflectance products, which spectral indexes should be computed from the original reflectance bands. For each output layer, outputs are saved as single-band raster files corresponding to each available acquisition date. Virtual files allowing access to the entire time series as a single file are also created. Command-line execution exploiting a previously saved processing options file is also possible, allowing users to automatically update time series related to a MODIS product whenever a new image is available. For additional documentation refer to the following article: Busetto and Ranghetti (2016) <doi:10.1016/j.cageo.2016.08.020>.
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2024-01-16 |
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r-monte.carlo.se
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Computes Monte Carlo standard errors for summaries of Monte Carlo output. Summaries and their standard errors are based on columns of Monte Carlo simulation output. Dennis D. Boos and Jason A. Osborne (2015) <doi:10.1111/insr.12087>.
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2024-01-16 |
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r-monotonicity
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Test for monotonicity in financial variables sorted by portfolios. It is conventional practice in empirical research to form portfolios of assets ranked by a certain sort variable. A t-test is then used to consider the mean return spread between the portfolios with the highest and lowest values of the sort variable. Yet comparing only the average returns on the top and bottom portfolios does not provide a sufficient way to test for a monotonic relation between expected returns and the sort variable. This package provides nonparametric tests for the full set of monotonic patterns by Patton, A. and Timmermann, A. (2010) <doi:10.1016/j.jfineco.2010.06.006> and compares the proposed results with extant alternatives such as t-tests, Bonferroni bounds, and multivariate inequality tests through empirical applications and simulations.
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2024-01-16 |
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r-mondrian
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The unique function of this package allows representing in a single graph the relative occurrence and co-occurrence of events measured in a sample. As examples, the package was applied to describe the occurrence and co-occurrence of different species of bacterial or viral symbionts infecting arthropods at the individual level. The graphics allows determining the prevalence of each symbiont and the patterns of multiple infections (i.e. how different symbionts share or not the same individual hosts). We named the package after the famous painter as the graphical output recalls Mondrian’s paintings.
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2024-01-16 |
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r-mondate
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Keep track of dates in terms of fractional calendar months per Damien Laker "Time Calculations for Annualizing Returns: the Need for Standardization", The Journal of Performance Measurement, 2008. Model dates as of close of business. Perform date arithmetic in units of "months" and "years". Allow "infinite" dates to model "ultimate" time.
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2024-01-16 |
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r-modistools
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public |
Programmatic interface to the Oak Ridge National Laboratories 'MODIS Land Products Subsets' web services (<https://modis.ornl.gov/data/modis_webservice.html>). Allows for easy downloads of 'MODIS' time series directly to your R workspace or your computer.
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2024-01-16 |
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r-moments
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public |
Functions to calculate: moments, Pearson's kurtosis, Geary's kurtosis and skewness; tests related to them (Anscombe-Glynn, D'Agostino, Bonett-Seier).
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2024-01-16 |
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r-momentchi2
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public |
A collection of moment-matching methods for computing the cumulative distribution function of a positively-weighted sum of chi-squared random variables. Methods include the Satterthwaite-Welch method, Hall-Buckley-Eagleson method, Wood's F method, and the Lindsay-Pilla-Basak method.
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2024-01-16 |
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r-mole
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public |
Model for simulating language evolution in terms of cultural evolution (Smith & Kirby (2008) <DOI:10.1098/rstb.2008.0145>; Deacon 1997). The focus is on the emergence of argument-marking systems (Dowty (1991) <DOI:10.1353/lan.1991.0021>, Van Valin 1999, Dryer 2002, Lestrade 2015a), i.e. noun marking (Aristar (1997) <DOI:10.1075/sl.21.2.04ari>, Lestrade (2010) <DOI:10.7282/T3ZG6R4S>), person indexing (Ariel 1999, Dahl (2000) <DOI:10.1075/fol.7.1.03dah>, Bhat 2004), and word order (Dryer 2013), but extensions are foreseen. Agents start out with a protolanguage (a language without grammar; Bickerton (1981) <DOI:10.17169/langsci.b91.109>, Jackendoff 2002, Arbib (2015) <DOI:10.1002/9781118346136.ch27>) and interact through language games (Steels 1997). Over time, grammatical constructions emerge that may or may not become obligatory (for which the tolerance principle is assumed; Yang 2016). Throughout the simulation, uniformitarianism of principles is assumed (Hopper (1987) <DOI:10.3765/bls.v13i0.1834>, Givon (1995) <DOI:10.1075/z.74>, Croft (2000), Saffran (2001) <DOI:10.1111/1467-8721.01243>, Heine & Kuteva 2007), in which maximal psychological validity is aimed at (Grice (1975) <DOI:10.1057/9780230005853_5>, Levelt 1989, Gaerdenfors 2000) and language representation is usage based (Tomasello 2003, Bybee 2010). In Lestrade (2015b) <DOI:10.15496/publikation-8640>, Lestrade (2015c) <DOI:10.1075/avt.32.08les>, and Lestrade (2016) <DOI:10.17617/2.2248195>), which reported on the results of preliminary versions, this package was announced as WDWTW (for who does what to whom), but for reasons of pronunciation and generalization the title was changed.
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2024-01-16 |
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r-mogavs
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public |
Functions for exploring the best subsets in regression with a genetic algorithm. The package is much faster than methods relying on complete enumeration, and is suitable for data sets with large number of variables. For more information, see Sinha, Malo & Kuosmanen (2015) <doi:10.1080/10618600.2014.899236>.
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2024-01-16 |
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r-modules
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public |
Provides modules as an organizational unit for source code. Modules enforce to be more rigorous when defining dependencies and have a local search path. They can be used as a sub unit within packages or in scripts.
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2024-01-16 |
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r-modturpoint
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public |
Turning point method is a method proposed by Choi (1990) <doi:10.2307/2531453> to estimate 50 percent effective dose (ED50) in the study of drug sensitivity. The method has its own advantages for that it can provide robust ED50 estimation. This package contains the modified function of Choi's turning point method.
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2024-01-16 |
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r-moderndive
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public |
Datasets and wrapper functions for tidyverse-friendly introductory linear regression, used in "Statistical Inference via Data Science: A ModernDive into R and the Tidyverse" available at <https://moderndive.com/>.
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2024-01-16 |
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r-modmax
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The algorithms implemented here are used to detect the community structure of a network. These algorithms follow different approaches, but are all based on the concept of modularity maximization.
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2024-01-16 |
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r-modmarg
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public |
Calculate predicted levels and marginal effects, using the delta method to calculate standard errors. This is an R-based version of the 'margins' command from Stata.
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2024-01-16 |
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r-modeltime.resample
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public |
A 'modeltime' extension that implements forecast resampling tools that assess time-based model performance and stability for a single time series, panel data, and cross-sectional time series analysis.
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2024-01-16 |
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r-modest
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public |
User-friendly Shiny apps for designing and evaluating phase I cancer clinical trials, with the aim to estimate the maximum tolerated dose (MTD) of a novel drug, using a Bayesian decision procedure based on logistic regression.
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2024-01-16 |
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r-modifiedmk
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Power of non-parametric Mann-Kendall test and Spearman’s Rho test is highly influenced by serially correlated data. To address this issue, trend tests may be applied on the modified versions of the time series data by Block Bootstrapping (BBS), Prewhitening (PW) , Trend Free Prewhitening (TFPW), Bias Corrected Prewhitening and Variance Correction Approach by calculating effective sample size. Mann, H. B. (1945).<doi:10.1017/CBO9781107415324.004>. Kendall, M. (1975). Multivariate analysis. Charles Griffin&Company Ltd,. sen, P. K. (1968).<doi:10.2307/2285891>. Önöz, B., & Bayazit, M. (2012) <doi:10.1002/hyp.8438>. Hamed, K. H. (2009).<doi:10.1016/j.jhydrol.2009.01.040>. Yue, S., & Wang, C. Y. (2002) <doi:10.1029/2001WR000861>. Yue, S., Pilon, P., Phinney, B., & Cavadias, G. (2002) <doi:10.1002/hyp.1095>. Hamed, K. H., & Ramachandra Rao, A. (1998) <doi:10.1016/S0022-1694(97)00125-X>. Yue, S., & Wang, C. Y. (2004) <doi:10.1023/B:WARM.0000043140.61082.60>.
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2024-01-16 |
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r-modeva
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Analyses species distribution models and evaluates their performance. It includes functions for variation partitioning, extracting variable importance, computing several metrics of model discrimination and calibration performance, optimizing prediction thresholds based on a number of criteria, performing multivariate environmental similarity surface (MESS) analysis, and displaying various analytical plots. Initially described in Barbosa et al. (2013) <doi:10.1111/ddi.12100>.
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2024-01-16 |
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r-modeltime.ensemble
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A 'modeltime' extension that implements time series ensemble forecasting methods including model averaging, weighted averaging, and stacking. These techniques are popular methods to improve forecast accuracy and stability. Refer to papers such as "Machine-Learning Models for Sales Time Series Forecasting" Pavlyshenko, B.M. (2019) <doi:10.3390>.
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2024-01-16 |
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r-modelwordcloud
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Makes a word cloud of text, sized by the frequency of the word, and colored either by user-specified colors or colored by the strength of the coefficient of that text derived from a regression model.
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2024-01-16 |
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r-modelsummary
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Create beautiful and customizable tables to summarize several statistical models side-by-side. Draw coefficient plots, multi-level cross-tabs, dataset summaries, balance tables (a.k.a. "Table 1s"), and correlation matrices. This package supports dozens of statistical models, and it can produce tables in HTML, LaTeX, Word, Markdown, PDF, PowerPoint, Excel, RTF, JPG, or PNG. Tables can easily be embedded in 'Rmarkdown' or 'knitr' dynamic documents. Details can be found in Arel-Bundock (2022) <doi:10.18637/jss.v103.i01>.
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2024-01-16 |
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r-modeltools
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A collection of tools to deal with statistical models. The functionality is experimental and the user interface is likely to change in the future. The documentation is rather terse, but packages `coin' and `party' have some working examples. However, if you find the implemented ideas interesting we would be very interested in a discussion of this proposal. Contributions are more than welcome!
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2024-01-16 |
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r-modeltime
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The time series forecasting framework for use with the 'tidymodels' ecosystem. Models include ARIMA, Exponential Smoothing, and additional time series models from the 'forecast' and 'prophet' packages. Refer to "Forecasting Principles & Practice, Second edition" (<https://otexts.com/fpp2/>). Refer to "Prophet: forecasting at scale" (<https://research.facebook.com/blog/2017/02/prophet-forecasting-at-scale/>.).
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2024-01-16 |
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r-modeltests
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Provides a number of testthat tests that can be used to verify that tidy(), glance() and augment() methods meet consistent specifications. This allows methods for the same generic to be spread across multiple packages, since all of those packages can make the same guarantees to users about returned objects.
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2024-01-16 |
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r-modelenv
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An developer focused, low dependency package in 'tidymodels' that provides functions to register how models are to be used. Functions to register models are complimented with accessor functions to retrieve registered model information to aid in model fitting and error handling.
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2024-01-16 |
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r-modelmap
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public |
Creates sophisticated models of training data and validates the models with an independent test set, cross validation, or Out Of Bag (OOB) predictions on the training data. Create graphs and tables of the model validation results. Applies these models to GIS .img files of predictors to create detailed prediction surfaces. Handles large predictor files for map making, by reading in the .img files in chunks, and output to the .txt file the prediction for each data chunk, before reading the next chunk of data.
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2024-01-16 |
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r-modeldata
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Data sets used for demonstrating or testing model-related packages are contained in this package.
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2024-01-16 |
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r-modelr
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Functions for modelling that help you seamlessly integrate modelling into a pipeline of data manipulation and visualisation.
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2024-01-16 |
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r-modelobj
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A utility library to facilitate the generalization of statistical methods built on a regression framework. Package developers can use 'modelObj' methods to initiate a regression analysis without concern for the details of the regression model and the method to be used to obtain parameter estimates. The specifics of the regression step are left to the user to define when calling the function. The user of a function developed within the 'modelObj' framework creates as input a 'modelObj' that contains the model and the R methods to be used to obtain parameter estimates and to obtain predictions. In this way, a user can easily go from linear to non-linear models within the same package.
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2024-01-16 |
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r-modeest
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Provides estimators of the mode of univariate data or univariate distributions.
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2024-01-16 |
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r-modelbased
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Implements a general interface for model-based estimations for a wide variety of models (see list of supported models using the function 'insight::supported_models()'), used in the computation of marginal means, contrast analysis and predictions.
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2024-01-16 |
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r-mockthat
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With the deprecation of mocking capabilities shipped with 'testthat' as of 'edition 3' it is left to third-party packages to replace this functionality, which in some test-scenarios is essential in order to run unit tests in limited environments (such as no Internet connection). Mocking in this setting means temporarily substituting a function with a stub that acts in some sense like the original function (for example by serving a HTTP response that has been cached as a file). The only exported function 'with_mock()' is modeled after the eponymous 'testthat' function with the intention of providing a drop-in replacement.
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2024-01-16 |
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r-mmod
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Provides functions for measuring population divergence from genotypic data.
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2024-01-16 |
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r-modehunt
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Given independent and identically distributed observations X(1), ..., X(n) from a density f, provides five methods to perform a multiscale analysis about f as well as the necessary critical values. The first method, introduced in Duembgen and Walther (2008), provides simultaneous confidence statements for the existence and location of local increases (or decreases) of f, based on all intervals I(all) spanned by any two observations X(j), X(k). The second method approximates the latter approach by using only a subset of I(all) and is therefore computationally much more efficient, but asymptotically equivalent. Omitting the additive correction term Gamma in either method offers another two approaches which are more powerful on small scales and less powerful on large scales, however, not asymptotically minimax optimal anymore. Finally, the block procedure is a compromise between adding Gamma or not, having intermediate power properties. The latter is again asymptotically equivalent to the first and was introduced in Rufibach and Walther (2010).
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2024-01-16 |
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r-modalclust
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Performs Modal Clustering (MAC) including Hierarchical Modal Clustering (HMAC) along with their parallel implementation (PHMAC) over several processors. These model-based non-parametric clustering techniques can extract clusters in very high dimensions with arbitrary density shapes. By default clustering is performed over several resolutions and the results are summarised as a hierarchical tree. Associated plot functions are also provided. There is a package vignette that provides many examples. This version adheres to CRAN policy of not spanning more than two child processes by default.
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2024-01-16 |
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r-mod09nrt
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Package for processing downloaded MODIS Surface reflectance Product HDF files. Specifically, MOD09 surface reflectance product files, and the associated MOD03 geolocation files (for MODIS-TERRA). The package will be most effective if the user installs MRTSwath (MODIS Reprojection Tool for swath products; <https://lpdaac.usgs.gov/tools/modis_reprojection_tool_swath>, and adds the directory with the MRTSwath executable to the default R PATH by editing ~/.Rprofile.
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2024-01-16 |
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r-mod
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public |
Creates modules inline or from a file. Modules can contain any R object and be nested. Each module have their own scope and package "search path" that does not interfere with one another or the user's working environment.
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2024-01-16 |
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r-mockr
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public |
Provides a means to mock a package function, i.e., temporarily substitute it for testing. Designed as a drop-in replacement for the now deprecated 'testthat::with_mock()' and 'testthat::local_mock()'.
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2024-01-16 |
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r-mockery
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The two main functionalities of this package are creating mock objects (functions) and selectively intercepting calls to a given function that originate in some other function. It can be used with any testing framework available for R. Mock objects can be injected with either this package's own stub() function or a similar with_mock() facility present in the 'testthat' package.
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2024-01-16 |
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r-mocca
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public |
Provides methods to analyze cluster alternatives based on multi-objective optimization of cluster validation indices. For details see Kraus et al. (2011) <doi:10.1007/s00180-011-0244-6>.
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2024-01-16 |
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r-mlvar
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public |
Estimates the multi-level vector autoregression model on time-series data. Three network structures are obtained: temporal networks, contemporaneous networks and between-subjects networks.
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2024-01-16 |
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r-mns
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public |
An implementation of the mixed neighbourhood selection (MNS) algorithm. The MNS algorithm can be used to estimate multiple related precision matrices. In particular, the motivation behind this work was driven by the need to understand functional connectivity networks across multiple subjects. This package also contains an implementation of a novel algorithm through which to simulate multiple related precision matrices which exhibit properties frequently reported in neuroimaging analysis.
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2024-01-16 |
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r-mmwrweek
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The first day of any MMWR week is Sunday. MMWR week numbering is sequential beginning with 1 and incrementing with each week to a maximum of 52 or 53. MMWR week #1 of an MMWR year is the first week of the year that has at least four days in the calendar year. This package provides functionality to convert Dates to MMWR day, week, and year and the reverse.
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2024-01-16 |
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r-mlt.docreg
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Additional documentation, a package vignette and regression tests for package mlt.
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2024-01-16 |
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r-mmtsne
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An implementation of multiple maps t-distributed stochastic neighbor embedding (t-SNE). Multiple maps t-SNE is a method for projecting high-dimensional data into several low-dimensional maps such that non-metric space properties are better preserved than they would be by a single map. Multiple maps t-SNE with only one map is equivalent to standard t-SNE. When projecting onto more than one map, multiple maps t-SNE estimates a set of latent weights that allow each point to contribute to one or more maps depending on similarity relationships in the original data. This implementation is a port of the original 'Matlab' library by Laurens van der Maaten. See Van der Maaten and Hinton (2012) <doi:10.1007/s10994-011-5273-4>. This material is based upon work supported by the United States Air Force and Defense Advanced Research Project Agency (DARPA) under Contract No. FA8750-17-C-0020. Any opinions, findings and conclusions or recommendations expressed in this material are those of the author(s) and do not necessarily reflect the views of the United States Air Force and Defense Advanced Research Projects Agency. Distribution Statement A: Approved for Public Release; Distribution Unlimited.
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2024-01-16 |
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r-mmpp
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Compute similarities and distances between marked point processes.
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2024-01-16 |
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r-mmpf
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public |
Marginalizes prediction functions using Monte-Carlo integration and computes permutation importance.
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2024-01-16 |
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r-mmpa
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To determine the number of quantitative assays needed for a sample of data using pooled testing methods, which include mini-pooling (MP), MP with algorithm (MPA), and marker-assisted MPA (mMPA). To estimate the number of assays needed, the package also provides a tool to conduct Monte Carlo (MC) to simulate different orders in which the sample would be collected to form pools. Using MC avoids the dependence of the estimated number of assays on any specific ordering of the samples to form pools.
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2024-01-16 |
