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r-nlgeocoder
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public |
R interface to the open location server API of 'Publieke Diensten Op de Kaart' (<http://www.pdok.nl>). It offers geocoding, address suggestions and lookup of geographical objects. Included is an utility function for displaying leaflet tiles restricted to the Netherlands.
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2023-06-16 |
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r-morsegen
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public |
MorseGen is a program for generating raw data based on user-specified summary (descriptive) statistics. Samples based on the supplied statistics are drawn from a normal distribution (or, in some cases, an exponential distribution) and scaled to match the desired descriptive statistics. Intended uses include creating raw data that fits desired characteristics or to replicate the results in a published study.
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2023-06-16 |
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r-modtempeff
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public |
Fits a Constrained Segmented Distributed Lag regression model to epidemiological time series of mortality, temperature, and other confounders.
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2023-06-16 |
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r-modes
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public |
Designed with a dual purpose of accurately estimating the mode (or modes) as well as characterizing the modality of data. The specific application area includes complex or mixture distributions particularly in a big data environment. The heterogeneous nature of (big) data may require deep introspective statistical and machine learning techniques, but these statistical tools often fail when applied without first understanding the data. In small datasets, this often isn't a big issue, but when dealing with large scale data analysis or big data thoroughly inspecting each dimension typically yields an O(n^n-1) problem. As such, dealing with big data require an alternative toolkit. This package not only identifies the mode or modes for various data types, it also provides a programmatic way of understanding the modality (i.e. unimodal, bimodal, etc.) of a dataset (whether it's big data or not). See <http://www.sdeevi.com/modes_package> for examples and discussion.
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2023-06-16 |
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r-ltsbase
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public |
This is a new tool to estimate Ridge and Liu estimators based on LTS method in multiple linear regression analysis.
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2023-06-16 |
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r-lpbrim
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public |
Optimization of bipartite modularity using LP-BRIM (Label propagation followed by Bipartite Recursively Induced Modularity).
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2023-06-16 |
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r-loop
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public |
The program can perform loop analysis and plot network structure (especially for food webs),including minimum spanning tree, loop decomposition of weighted directed graphs, and other network properties which may be related to food chain properties in ecology.
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2023-06-16 |
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r-logicoil
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public |
This package contains the functions necessary to run the LOGICOIL algorithm. LOGICOIL can be used to differentiate between antiparallel dimers, parallel dimers, trimers and higher-order coiled-coil sequence. By covering >90 percent of the known coiled-coil structures, LOGICOIL is a net improvement compared with other existing methods, which achieve a predictive coverage of around 31 percent of this population. As such, LOGICOIL is particularly useful for researchers looking to characterize novel coiled-coil sequences or studying coiled-coil containing protein assemblies. It may also be used to assist in the structural characterization of synthetic coiled-coil sequences.
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2023-06-16 |
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r-nlar
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public |
Client for programmatic access to the 2007 and 2012 National Lakes Assessment database <https://www.epa.gov/national-aquatic-resource-surveys/nla> containing data for hundreds of lakes in the lower 48 states of the contiguous US.
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2023-06-16 |
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r-mpinet
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public |
(1) Our system provides a network-based strategies for metabolite pathway identification.(2) The MPINet can support the identification of pathways using Hypergeometric test based on metabolite set. (3)MPINet can support pathways from multiple databases.
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2023-06-16 |
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r-mist
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public |
Test for association between a set of SNPS/genes and continuous or binary outcomes by including variant characteristic information and using (weighted) score statistics.
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2023-06-16 |
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r-mac
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public |
This is an integrated meta-analysis package for conducting a correlational research synthesis. One of the unique features of this package is in its integration of user-friendly functions to facilitate statistical analyses at each stage in a meta-analysis with correlations. It uses recommended procedures as described in The Handbook of Research Synthesis and Meta-Analysis (Cooper, Hedges, & Valentine, 2009).
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2023-06-16 |
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r-lpmodeler
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public |
lpmodeler is a set of user-friendly functions to simplify the modelling of linear programs (LP) and mixed integer programs (MIP). It provides a unified interface compatible with optimization packages: Rsymphony.
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2023-06-16 |
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r-ldtests
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public |
Exact tests for Linkage Disequilibrium (LD) and Hardy-Weinberg Equilibrium (HWE). - 2-sided LD tests based on different measures of LD (Kulinskaya and Lewin 2008) - 1-sided Fisher's exact test for LD - 2-sided Haldane test for HWE (Wiggington 2005) - 1-sided test for inbreeding - conditional p-values proposed in Kulinskaya (2008) to overcome the problems of asymetric distributions (for both LD and HWE)
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2023-06-16 |
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r-nlsrk
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public |
Performs univariate or multivariate computation of a single ODE or of a set of ODE (ordinary differential equations).
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2023-06-16 |
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r-neural
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public |
RBF and MLP neural networks with graphical user interface
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2023-06-16 |
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r-needy
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public |
needy is a small utility library designed to make testing function inputs less difficult. R is a dynamically typed language, but larger projects need input checking for scalabity. needy offers a single function, require_a( ), which lets you specify the traits an input object should have, such as class, size, numerical properties or number of parameters, while reducing boilerplate code and aiding debugging.
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2023-06-16 |
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r-nb
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public |
Estimate the effective population size of a closed population using genetic data collected from two or more data points.
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2023-06-16 |
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r-mleur
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public |
Provides functions for unit root testing using MLE method
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2023-06-16 |
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r-mf
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public |
Calculate MF (mitigated fraction) with clustering and bootstrap options. See http://goo.gl/pcXYVr for definition of MF.
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2023-06-16 |
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r-metabolouise
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public |
Simulating dynamic (longitudinal, time-resolved) metabolomics data based on an underlying biological network. The network is initiating with certain concentrations and evolves over a simulated time period. Optionally external influxes (concentration drivers) can be added.
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2023-06-16 |
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r-maples
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public |
MAPLES is a general method for the estimation of age profiles that uses standard micro-level demographic survey data. The aim is to estimate smoothed age profiles and relative risks for time-fixed and time-varying covariates.
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2023-06-16 |
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r-loadr
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public |
Provides intuitive functions for loading objects into environments, encouraging less cluttered workspaces and sharing variables with large or reusable data across users and sessions. The user provides named variables which are loaded into the variable environment for later retrieval.
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2023-06-16 |
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r-lisp
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public |
Though SRFI-1 scopes both list-processing and higher-order programming, we'll save some list-orthogonal functions for the `functional' package; this is freely a mixture of implementation and API.
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2023-06-16 |
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r-leersiecyl
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public |
Functions to download data from the SIE, which is the Statistical Information System (Sistema de Información Estadística) in the Statistical Portal of the Government of Castilla y León (Spain) <https://estadistica.jcyl.es>.
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2023-06-16 |
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r-mwlasso
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public |
The Moving-Window Lasso (MWLasso) method for genome-wide association studies. A window scans the design matrix. For predictors in the same window, their coefficients estimates are smoothed.
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2023-06-16 |
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r-mvprpb
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public |
Computes orthant probabilities multivariate normal distribution.
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2023-06-16 |
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r-mrsurv
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public |
This package contains functions, data and examples to compute a multiplicative-regression model for relative survival.
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2023-06-16 |
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r-mppa
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public |
A procedure to test for dependence between point processes on the real line, e.g. causal dependence, correlation, inhibition or anti-correlation. The package also provides a number of utilities for plotting simultaneous point processes, and combining p-values.
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2023-06-16 |
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r-mpcv
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public |
Multivariate process capability analysis using the multivariate process capability vector. Allows to analyze a multivariate process with both normally and non-normally distributed and also with dependent and independent quality characteristics.
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2023-06-16 |
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r-mmms
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public |
The package implements a multi-marker molecular signature (MMMS) approach for treatment-specific subgroup identification.
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2023-06-16 |
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r-mmds
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public |
This library implements mixture model distance sampling methods. See Miller and Thomas (in prep.).
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2023-06-16 |
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r-minxent
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public |
This package implements entropy optimization distribution under specified constraints. It also offers an R interface to the MinxEnt and MaxEnt distributions.
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2023-06-16 |
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r-miney
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public |
This package implements the core idea of games known as 'Minesweeper' on Microsoft Windows or 'KMines' for KDE on Unix-like operating systems.
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2023-06-16 |
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r-ltr
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public |
A set of functions to execute the linear-transformation of replicate (LTR) algorithm for preprocessing of microarray data
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2023-06-16 |
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r-leapfrog
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public |
Contains LEAPFrOG Gradient Optimisation and Expectation Maximisation functions for inferring parental admixture proportions from an offspring with SNP genotypes.
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2023-06-16 |
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r-leaflet.opacity
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public |
Extends the 'leaflet' R package with the 'Leaflet.OpacityControls' JavaScript plugin. Adds controls to the leaflet map for adjusting the opacity of a layer.
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2023-06-16 |
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r-mpkn
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public |
A matrix discrete model having the form 'M[i+1] = (I + Q)*M[i]'. The calculation of the values of 'M[i]' only for pre-selected values of 'i'. The method of calculation is presented in the vignette 'Fundament' ('Base'). Maybe it`s own idea of the author of the package. A weakness is that the method gives information only in selected steps of the process. It mainly refers to cases with matrices that are not Markov chain. If 'Q' is Markov transition matrix, then MUPkL() may be used to calculate the steady-state distribution 'p' for 'p = Q*p'. Matrix power of non integer (matrix.powerni()) gives the same results as a mpower() from package 'matlib'. References: "Markov chains", (<https://en.wikipedia.org/wiki/Markov_chain#Expected_number_of_visits>). Donald R. Burleson, Ph.D. (2005), "ON NON-INTEGER POWERS OF A SQUARE MATRIX", (<http://www.blackmesapress.com/Eigenvalues.htm>).
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2023-06-16 |
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r-monographar
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public |
Contains functions intended to facilitate the production of plant taxonomic monographs. The package includes functions to convert tables into taxonomic descriptions, lists of collectors, examined specimens, and can generate a monograph skeleton. Additionally, wrapper functions to batch the production of phenology charts and distributional and diversity maps are also available.
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2023-06-16 |
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r-mise
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public |
Clears the workspace. Useful for the beginnings of R scripts, to avoid potential problems with accidentally using information from variables or functions from previous script evaluations, too many figure windows open at the same time, packages that you don't need any more, or a cluttered console. Uses code from various StackOverflow users. See help(mise) for pointers to the relevant StackOverflow pages.
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2023-06-16 |
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r-miscor
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public |
Statistical test for the product-moment correlation coefficient based on H0: rho = rho0 including sample size computation, statistical test for comparing the product-moment correlation coefficient in independent ad dependent samples, sequential triangular test for the product-moment correlation coefficient, partial and semipartial correlation, simulation of bivariate normal and non-normal distribution with a specified correlation.
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2023-06-16 |
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r-mgraster
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public |
Convenience Functions for R Language Access to the v.1 API of the MG-RAST Metagenome Annotation Server, part of the US Department of Energy (DOE) Systems Biology Knowledge Base (KBase).
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2023-06-16 |
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r-mctm
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public |
Transition matrices (probabilities or counts) estimation for discrete Markov Chains of order n (1 <= n <= 5).
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2023-06-16 |
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r-mcbftest
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public |
Monte Carol based tests for the Behrens Fisher Problem enhance the statistical power and performs better than Welch's t-approximation, see Ullah et al. (2019).
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2023-06-16 |
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r-lsdv
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public |
Fit a least square dummy variable regression
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2023-06-16 |
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r-logranka
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public |
LogrankA provides a logrank test across unlimited groups with the possibility to input aggregated survival data.
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2023-06-16 |
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r-ln0scis
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public |
Construct the simultaneous confidence intervals for ratios of means of Log-normal populations with zeros. It also has a Python module that do the same thing, and can be applied to multiple comparisons of parameters of any k mixture distributions. And we provide four methods, the method based on generalized pivotal quantity with order statistics and the quantity based on Wilson by Li et al. (2009) <doi:10.1016/j.spl.2009.03.004> (GPQW), and the methods based on generalized pivotal quantity with order statistics and the quantity based on Hannig (2009) <doi:10.1093/biomet/asp050> (GPQH). The other two methods are based on two-step MOVER intervals by Amany H, Abdel K (2015) <doi:10.1080/03610918.2013.767911>. We deduce Fiducial generalized pivotal two-step MOVER intervals based on Wilson quantity (FMW) and based on Hannig's quantity (FMWH). All these approach you can find in the paper of us which it has been submitted.
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2023-06-16 |
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r-nlirms
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Design of non-life insurance rate-making system with a frequency and a severity component based on the a posteriori criteria. The rate-making system is a general form of bonus-malus system introduced by Lemaire (1995), <doi:10.1007/978-94-011-0631-3> and Frangos and Vrontos (2001), <doi:10.2143/AST.31.1.991>.
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2023-06-16 |
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r-ncdunnett
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public |
Computes the noncentral Dunnett's test distribution (pdf, cdf and quantile) and generates random numbers.
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2023-06-16 |
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r-multiband
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public |
Algorithms for performing joint parameter estimation in astronomical survey data acquired in multiple bands.
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2023-06-16 |
