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r-sparkr
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Provides an R Front end for 'Apache Spark' <https://spark.apache.org>.
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2023-06-16 |
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r-sportsanalytics
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The aim of this package is to provide infrastructure for sports analysis. Anyway, currently it is a selection of data sets, functions to fetch sports data, examples, and demos -- with the ambition to develop bit by bit a set of classes to represent general concepts of sports analysis.
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2023-06-16 |
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r-spiders
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Fits and simulates data from our predator preferences model, <DOI:10.1007/s10651-016-0341-3>.
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2023-06-16 |
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r-spanel
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Fit the spatial panel data models: the fixed effects, random effects and between models.
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2023-06-16 |
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r-scrabblescore
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Given a word will produce that word's scrabble score. Unlike many naive implementations this package takes into consideration the distribution of letter in scrabble. So a word like 'zzz' will be scored '10' rather than '30'.
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2023-06-16 |
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r-sbf
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Smooth Backfitting for additive models using Nadaraya-Watson estimator
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2023-06-16 |
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r-rxnat
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Allows communication with Extensible Neuroimaging Archive Toolkit <https://www.xnat.org>. 'Rxnat' is using the 'XNAT' REST API to perform data queries and download images.
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2023-06-16 |
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r-rromeo
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Fetches information from the 'SHERPA/RoMEO' API <http://www.sherpa.ac.uk/romeo/apimanual.php> which indexes policies of journal regarding the archival of scientific manuscripts before and/or after peer-review as well as formatted manuscripts.
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2023-06-16 |
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r-rpsychi
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The rpsychi offers a number of functions for psychiatry, psychiatric nursing, clinical psychology. Functions are primarily for statistical significance testing using published work. For example, you can conduct a factorial analysis of variance (ANOVA), which requires only the mean, standard deviation, and sample size for each cell, rather than the individual data. This package covers fundamental statistical tests such as t-test, chi-square test, analysis of variance, and multiple regression analysis. With some exceptions, you can obtain effect size and its confidence interval. These functions help you to obtain effect size from published work, and then to conduct a priori power analysis or meta-analysis, even if a researcher do not report effect size in a published work.
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2023-06-16 |
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r-rjython
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R interface to Python via Jython allowing R to call python code.
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2023-06-16 |
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r-reliability
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Functions for estimating parameters in software reliability models. Only infinite failure models are implemented so far.
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2023-06-16 |
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r-rcrypt
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Provides easy symmetric file encryption using GPG with cryptographically strong defaults. Only symmetric encryption is supported. GPG is pre-installed with most Linux distributions. Windows users will need to install 'Gpg4win' (http://www.gpg4win.org/). OS X users will need to install 'GPGTools' (https://gpgtools.org/).
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2023-06-16 |
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r-rbitcoin
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Utilities related to Bitcoin. Unified markets API interface (bitstamp, kraken, btce, bitmarket). Both public and private API calls. Integration of data structures for all markets. Support SSL. Read Rbitcoin documentation (command: ?btc) for more information.
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2023-06-16 |
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r-sphericalk
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Spherical K-function for point-pattern analysis on the sphere.
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2023-06-16 |
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r-sparql
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Use SPARQL to pose SELECT or UPDATE queries to an end-point.
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2023-06-16 |
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r-source.gist
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Analogous to source(), but works when given a Gist URL or ID.
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2023-06-16 |
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r-spi
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Compute the SPI index using R
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2023-06-16 |
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r-speccalt
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Alternative to the kernlab::specc function. Includes a spectral clustering implementation, a locally adapted kernel function akin to what is already proposed in kernlab, and an optional procedure that automatically estimates the optimal number of clusters. Several sample data sets are also included.
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2023-06-16 |
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r-somebm
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some Brownian motions simulation functions
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2023-06-16 |
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r-sin
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This package provides routines to perform SIN model selection as described in Drton & Perlman (2004, 2008). The selected models are represented in the format of the 'ggm' package, which allows in particular parameter estimation in the selected model.
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2023-06-16 |
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r-searchable
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Provides functionality for searching / subsetting and slicing named objects using 'stringr/i'-style modifiers by case (in)sensitivity, regular expressions or fixed expressions; searches uses the standard '[' operator and allows specification of default search behavior to either the search target (named object) and/or the search pattern.
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2023-06-16 |
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r-rocwogs
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Function to estimate the ROC Curve of a continuous-scaled diagnostic test with the help of a second imperfect diagnostic test with binary responses.
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2023-06-16 |
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r-rht
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This package offers functions to perform regularized Hotelling's T-square test for pathway or gene set analysis. The package is tailored for but not limited to proteomics data, in which sample sizes are often small, a large proportion of the data are missing and/or correlations may be present.
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2023-06-16 |
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r-rgr
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Geological Survey of Canada (GSC) functions for exploratory data analysis with applied geochemical data, with special application to the estimation of background ranges and identification of outliers, 'anomalies', to support mineral exploration and environmental studies. Additional functions are provided to support analytical data QA/QC, ANOVA for investigations of field sampling and analytical variability, and utility tasks. NOTE: function caplot() for concentration-area plots employs package 'akima', however, 'akima' is only licensed for not-for-profit use. Therefore, not-for-profit users of 'rgr' will have to independently make package 'akima' available through library(....); and use of function caplot() by for-profit users will fail.
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2023-06-16 |
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r-relen
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This function computes the relative entropy (H) as an index for qualitative variation of a factor.
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2023-06-16 |
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r-r2stl
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r2stl, R package for visualizing data using a 3D printer Package r2stl converts R data to STL (stereolithography) files that can be used to feed a 3-dimensional printer. The 3-dimensional output from an R function can be materialized into a solid surface in a plastic material, therefore allowing more detailed examination. There are many possible uses for this new R tool, such as to examine mathematical expressions with very irregular shapes, to aid teaching people with impaired vision, to create raised relief maps from digital elevation maps (DEMs), to bridge the gap between mathematical tools and rapid prototyping, and many more. Ian Walker created the function "r2stl" and Jose' Gama assembled the package.
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2023-06-16 |
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r-r2dgc
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Provides functions for aligning 2D gas chromatography mass spectrometry derived metabolite peaks obtained from primary processing and generates an alignment table that allows for a comparison of common peaks across samples and metabolite identification. Publication describing the package in detail is available at the following citation: Ryne C. Ramaker, Emily Gordon, Sara J. Cooper (2017) <doi:10.1101/179168>.
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2023-06-16 |
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r-proteomicdesign
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This package provides functions to identify the optimal solution that maximizes numbers of detectable differentiated proteins from a multi-stage clinical proteomic study.
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2023-06-16 |
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r-slc
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Estimates the slope and level change present in data after removing phase A trend. Represents graphically the original and the detrended data.
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2023-06-16 |
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r-simphe
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Provides functions to simulate single or multiple, independent or correlated phenotype(s) with additive, dominance effects and their interactions. Also includes functions to generate phenotype(s) with specific heritability. Flexible and user-friendly options for simulation.
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2023-06-16 |
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r-rodam
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'ODAM' (Open Data for Access and Mining) is a framework that implements a simple way to make research data broadly accessible and fully available for reuse, including by a script language such as R. The main purpose is to make a data set accessible online with a minimal effort from the data provider, and to allow any scientists or bioinformaticians to be able to explore the data set and then extract a subpart or the totality of the data according to their needs. The Rodam package has only one class, 'odamws', that provides methods to allow you to retrieve online data using 'ODAM' Web Services. This obviously requires that data are implemented according the 'ODAM' approach , namely that the data subsets were deposited in the suitable data repository in the form of TSV files associated with their metadata also described in TSV files. See <https://inrae.github.io/ODAM/>.
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2023-06-16 |
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r-rjazz
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This is the official 'Jazz' client. 'Jazz' is a lightweight modular data processing framework, including a web server. It provides data persistence and computation capabilities accessible from 'R' and 'Python' and also through a REST API. <https://github.com/bbvadata/Jazz> See ?rjazz::rjazz to get a 'Jazz' server.
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2023-06-16 |
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r-rdroolsjars
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External jars required for package 'Rdrools'.
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2023-06-16 |
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r-psi
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public |
This package contains functions to calculate the Specificity Index statistic, which can be used for comparative quantitative analysis to identify genes enriched in specific cell populations across a large number of profiles, as well as perform numerous post-processing operations. NOTE:Supplementary data (human & mouse expression sets, calculated pSI datasets, etc.) can be found in pSI.data package located at the following URL: http://genetics.wustl.edu/jdlab/psi_package/
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2023-06-16 |
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r-proteindescriptors
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An implementation of protein descriptors in R. These descriptors combine the advantages of being fixed length and including partial sequential effect: Various length of protein sequences are described with fixed length vectors that are suitable for machine learning algorithms, and still includes partial sequential effect.
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2023-06-16 |
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r-sortablehtmltables
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SortableHTMLTables writes a data frame to an HTML file that contains a sortable table. The sorting is done using the jQuery plugin Tablesorter. The appearance is controlled through a CSS file and several GIF's.
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2023-06-16 |
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r-softmaxreg
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Implementation of 'softmax' regression and classification models with multiple layer neural network. It can be used for many tasks like word embedding based document classification, 'MNIST' dataset handwritten digit recognition and so on. Multiple optimization algorithm including 'SGD', 'Adagrad', 'RMSprop', 'Moment', 'NAG', etc are also provided.
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2023-06-16 |
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r-ship
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The SHIP-package allows the estimation of various types of shrinkage covariance matrices. These types differ in terms of the so-called covariance target (to be chosen by the user), the highly structured matrix which the standard unbiased sample covariance matrix is shrunken towards and which optionally incorporates prior biological knowledge extracted from the database KEGG. The shrinkage intensity is obtained via an analytical procedure.
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2023-06-16 |
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r-sgrsea
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Provides functions to implement sgRSEA (single-guide RNA Set Enrichment Analysis), which is a robust test for identification of essential genes from genetic screening data using CRISPR (clustered regularly interspaced short palindromic repeats) and Cas9 (CRISPR-associated nuclease 9) system.
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2023-06-16 |
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r-seqrflp
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This package includes functions for handling DNA sequences, especially simulated RFLP and TRFLP pattern based on selected restriction enzyme and DNA sequences.
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2023-06-16 |
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r-seermapperwest
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Provides supplemental 2000 census tract boundaries for the 13 states without Seer Registries that are west of the Mississippi river for use with the 'SeerMapper' package. The data contained in this package is derived from U.S. 2000 Census data and is in the public domain. Updated to Alber Equal Area projection.
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2023-06-16 |
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r-seasic
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This package conducts Score Equity Assessment (SEA; Dorans, 2004) by calculating and plotting multiple SEA indices as introduced by a variety of authors and summarized by Huggins and Penfield (2012).
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2023-06-16 |
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r-rzeit2
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Interface to gather newspaper articles from 'DIE ZEIT' and 'ZEIT ONLINE', based on a multilevel query <http://developer.zeit.de/>. A personal API key is required for usage.
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2023-06-16 |
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r-rivervis
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This R package is a flexible and efficient tool to visualise both quantitative and qualitative data from river surveys. It can be used to produce diagrams with the topological structure of the river network.
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2023-06-16 |
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r-rforcecom
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Insert, update, retrieve, delete and bulk operate datasets with a SaaS based CRM Salesforce.com and a PaaS based application platform Force.com from R.
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2023-06-16 |
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r-rfinanceyj
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Japanese stock market from Yahoo!-finance-Japan
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2023-06-16 |
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r-rfdsn
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This package facilitates searching for and downloading seismic time series in miniSEED format (a minimalist version of the Standard for the Exchange of Earthquake Data) from International Federation of Digital Seismograph Networks repositories. This package can also be used to gather information about seismic networks (stations, channels, locations, etc) and find historical earthquake data (origins, magnitudes, etc).
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2023-06-16 |
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r-represent
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Contains workhorse function jrparams(), as well as two helper functions Mboxtest() and JRsMahaldist(), and four example data sets.
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2023-06-16 |
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r-relvalanalysis
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Classes and functions for analyzing the performance of portfolios relative to a benchmark.
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2023-06-16 |
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r-reams
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Resampling methods for adaptive linear model selection. These can be thought of as extensions of the Akaike information criterion that account for searching among candidate models.
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2023-06-16 |
