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r-inarmix
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public |
Fits mixtures models for longitudinal data. Appropriate when the data are counts and when the correlation structure is assumed to be AR(1).
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2025-04-22 |
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r-imptree
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public |
Creation of imprecise classification trees. They rely on probability estimation within each node by means of either the imprecise Dirichlet model or the nonparametric predictive inference approach. The splitting variable is selected by the strategy presented in Fink and Crossman (2013) <http://www.sipta.org/isipta13/index.php?id=paper&paper=014.html>, but also the original imprecise information gain of Abellan and Moral (2003) <doi:10.1002/int.10143> is covered.
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2025-04-22 |
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r-immigrate
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public |
Based on large margin principle, this package performs feature selection methods: "IM4E"(Iterative Margin-Maximization under Max-Min Entropy Algorithm); "Immigrate"(Iterative Max-Min Entropy Margin-Maximization with Interaction Terms Algorithm); "BIM"(Boosted version of IMMIGRATE algorithm); "Simba"(Iterative Search Margin Based Algorithm); "LFE"(Local Feature Extraction Algorithm). This package also performs prediction for the above feature selection methods.
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2025-04-22 |
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r-imputemdr
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public |
This package provides various approaches to handling missing values for the MDR analysis to identify gene-gene interactions using biallelic marker data in genetic association studies
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2025-04-22 |
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r-imagine
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public |
Provides fast application of image filters to data matrices, using R and C++ algorithms.
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2025-04-22 |
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r-im
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public |
Compute moments of images and perform reconstruction from moments.
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2025-04-22 |
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r-image
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public |
Performs mQTL (methylation quantitative-trait locus) mapping in bisulfite sequencing studies by fitting a binomial mixed model and then incorporating the allelic-specific methylation pattern. Based on Fan, Yue; Vilgalys, Tauras P.; Sun, Shiquan; Peng, Qinke; Tung, Jenny; Zhou, Xiang (2019) <doi:10.1101/615039>.
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2025-04-22 |
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r-iilasso
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public |
Efficient algorithms for fitting linear / logistic regression model with Independently Interpretable Lasso. Takada, M., Suzuki, T., & Fujisawa, H. (2018). Independently Interpretable Lasso: A New Regularizer for Sparse Regression with Uncorrelated Variables. AISTATS. <http://proceedings.mlr.press/v84/takada18a/takada18a.pdf>.
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2025-04-22 |
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r-ifs
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public |
Iterated Function Systems Estimator as in Iacus and La Torre (2005) <doi:10.1155/JAMDS.2005.33>.
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2025-04-22 |
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r-ieeeround
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public |
A pair of functions for getting and setting the IEEE rounding mode for floating point computations.
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2025-04-22 |
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r-ifctools
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Provides utility functions to deal with Italian fiscal code ('codice fiscale').
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2025-04-22 |
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r-ifa
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The package performes Independent Factor Analysis
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2025-04-22 |
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r-idmtpreg
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Modeling of regression effects for transition probabilities in a progressive illness-death model. Azarang, Scheike, and de Una-Alvarez (2017) <doi:10.1002/sim.7245>.
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2025-04-22 |
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r-identity
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Calculate identity coefficients, based on Mark Abney's C code.
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2025-04-22 |
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r-idpmisc
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public |
Different high-level graphics functions for displaying large datasets, displaying circular data in a very flexible way, finding local maxima, brewing color ramps, drawing nice arrows, zooming 2D-plots, creating figures with differently colored margin and plot region. In addition, the package contains auxiliary functions for data manipulation like omitting observations with irregular values or selecting data by logical vectors, which include NAs. Other functions are especially useful in spectroscopy and analyses of environmental data: robust baseline fitting, finding peaks in spectra, converting humidity measures.
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2025-04-22 |
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r-icemelt
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public |
Estimates the parameters of the semiparametric linear transformation model using imputation method, naive method and regression calibration method when time-to-event is interval-censored and a covariate is measured with error. A right censoring indicator must be available. The methods implemented in this package can be found in Mandal, S., Wang, S. and Sinha, S. (2019+). Analysis of Linear Transformation Models with Covariate Measurement Error and Interval Censoring. (accepted, Statistics In Medicine).
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2025-04-22 |
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r-icr
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public |
Provides functions to compute and plot Krippendorff's inter-coder reliability coefficient alpha and bootstrapped uncertainty estimates (Krippendorff 2004, ISBN:0761915443). The bootstrap routines are set up to make use of parallel threads where supported.
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2025-04-22 |
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r-icensmis
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We consider studies in which information from error-prone diagnostic tests or self-reports are gathered sequentially to determine the occurrence of a silent event. Using a likelihood-based approach incorporating the proportional hazards assumption, we provide functions to estimate the survival distribution and covariate effects. We also provide functions for power and sample size calculations for this setting. Please refer to Xiangdong Gu, Yunsheng Ma, and Raji Balasubramanian (2015) <doi: 10.1214/15-AOAS810>, Xiangdong Gu and Raji Balasubramanian (2016) <doi: 10.1002/sim.6962>, Xiangdong Gu, Mahlet G Tadesse, Andrea S Foulkes, Yunsheng Ma, and Raji Balasubramanian (2020) <doi: 10.1186/s12911-020-01223-w>.
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2025-04-22 |
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r-icranks
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Algorithms to construct simultaneous confidence intervals for the ranks of means mu_1,...,mu_n based on an independent Gaussian sample using multiple testing techniques.
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2025-04-22 |
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r-excel.link
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Allows access to data in running instance of Microsoft Excel (e. g. 'xl[a1] = xl[b2]*3' and so on). Graphics can be transferred with 'xl[a1] = current.graphics()'. Additionally there are function for reading/writing 'Excel' files - 'xl.read.file'/'xl.save.file'. They are not fast but able to read/write '*.xlsb'-files and password-protected files. There is an Excel workbook with examples of calling R from Excel in the 'doc' folder. It tries to keep things as simple as possible - there are no needs in any additional installations besides R, only 'VBA' code in the Excel workbook. Microsoft Excel is required for this package.
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2025-04-22 |
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openssl
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OpenSSL is an open-source implementation of the SSL and TLS protocols
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2025-04-22 |
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r-pkgdown
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Generate an attractive and useful website from a source package. 'pkgdown' converts your documentation, vignettes, 'README', and more to 'HTML' making it easy to share information about your package online.
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2025-04-22 |
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r-rematch2
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Wrappers on 'regexpr' and 'gregexpr' to return the match results in tidy data frames.
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2025-04-22 |
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r-rdsm
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Provides a threads-type programming environment for R. The package gives the R programmer the clearer, more concise shared memory world view, and in some cases gives superior performance as well. In addition, it enables parallel processing on very large, out-of-core matrices.
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2025-04-22 |
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r-highlight
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public |
Syntax highlighter for R code based on the results of the R parser. Rendering in HTML and latex markup. Custom Sweave driver performing syntax highlighting of R code chunks.
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2025-04-22 |
