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r-batch
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public |
Functions to allow you to easily pass command-line arguments into R, and functions to aid in submitting your R code in parallel on a cluster and joining the results afterward (e.g. multiple parameter values for simulations running in parallel, splitting up a permutation test in parallel, etc.). See `parseCommandArgs(...)' for the main example of how to use this package.
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2024-01-16 |
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r-bass
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public |
Bayesian fitting and sensitivity analysis methods for adaptive spline surfaces described in <doi:10.18637/jss.v094.i08>. Built to handle continuous and categorical inputs as well as functional or scalar output. An extension of the methodology in Denison, Mallick and Smith (1998) <doi:10.1023/A:1008824606259>.
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2024-01-16 |
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r-base.rms
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public |
We perform linear, logistic, and cox regression using the base functions lm(), glm(), and coxph() in the R software and the 'survival' package. Likewise, we can use ols(), lrm() and cph() from the 'rms' package for the same functionality. Each of these two sets of commands has a different focus. In many cases, we need to use both sets of commands in the same situation, e.g. we need to filter the full subset model using AIC, and we need to build a visualization graph for the final model. 'base.rms' package can help you to switch between the two sets of commands easily.
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2024-01-16 |
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r-basicmcmcplots
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public |
Provides methods for examining posterior MCMC samples from a single chain using trace plots and density plots, and from multiple chains by comparing posterior medians and credible intervals from each chain. These plotting functions have a variety of options, such as figure sizes, legends, parameters to plot, and saving plots to file. Functions interface with the NIMBLE software package, see de Valpine, Turek, Paciorek, Anderson-Bergman, Temple Lang and Bodik (2017) <doi:10.1080/10618600.2016.1172487>.
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2024-01-16 |
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r-bartmachine
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public |
An advanced implementation of Bayesian Additive Regression Trees with expanded features for data analysis and visualization.
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2024-01-16 |
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r-basetheme
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public |
Functions to create and select graphical themes for the base plotting system. Contains: 1) several custom pre-made themes 2) mechanism for creating new themes by making persistent changes to the graphical parameters of base plots.
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2024-01-16 |
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r-baseline
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public |
Collection of baseline correction algorithms, along with a framework and a Tcl/Tk enabled GUI for optimising baseline algorithm parameters. Typical use of the package is for removing background effects from spectra originating from various types of spectroscopy and spectrometry, possibly optimizing this with regard to regression or classification results. Correction methods include polynomial fitting, weighted local smoothers and many more.
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2024-01-16 |
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r-bang
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public |
Provides functions for the Bayesian analysis of some simple commonly-used models, without using Markov Chain Monte Carlo (MCMC) methods such as Gibbs sampling. The 'rust' package <https://cran.r-project.org/package=rust> is used to simulate a random sample from the required posterior distribution, using the generalized ratio-of-uniforms method. See Wakefield, Gelfand and Smith (1991) <DOI:10.1007/BF01889987> for details. At the moment three conjugate hierarchical models are available: beta-binomial, gamma-Poisson and a 1-way analysis of variance (ANOVA).
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2024-01-16 |
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r-base64
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public |
Compatibility wrapper to replace the orphaned package. New applications should use base64 encoders from 'jsonlite' or 'openssl' or 'base64enc'.
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2024-01-16 |
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r-bartmachinejars
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public |
These are bartMachine's Java dependency libraries. Note: this package has no functionality of its own and should not be installed as a standalone package without bartMachine.
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2024-01-16 |
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r-barcodingr
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public |
To perform species identification using DNA barcodes.
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2024-01-16 |
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r-barborgradient
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public |
Tool to find where a function has its lowest value(minimum). The functions can be any dimensions. Recommended use is with eps=10^-10, but can be run with 10^-20, although this depends on the function. Two more methods are in this package, simple gradient method (Gradmod) and Powell method (Powell). These are not recommended for use, their purpose are purely for comparison.
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2024-01-16 |
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r-barcode
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public |
The function \code{barcode()} produces a histogram-like plot of a distribution that shows granularity in the data.
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2024-01-16 |
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r-banxicor
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public |
Provides functions to scrape IQY calls to Bank of Mexico, downloading and ordering the data conveniently.
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2024-01-16 |
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r-bannercommenter
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public |
A convenience package for use while drafting code. It facilitates making stand-out comment lines decorated with bands of characters. The input text strings are converted into R comment lines, suitably formatted. These are then displayed in a console window and, if possible, automatically transferred to a clipboard ready for pasting into an R script. Designed to save time when drafting R scripts that will need to be navigated and maintained by other programmers.
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2024-01-16 |
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r-babynames
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public |
US baby names provided by the SSA. This package contains all names used for at least 5 children of either sex.
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2024-01-16 |
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r-balancecheck
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public |
Two practical tests are provided for assessing whether multiple covariates in a treatment group and a matched control group are balanced in observational studies.
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2024-01-16 |
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r-badger
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public |
Query information and generate badge for using in README and GitHub Pages.
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2024-01-16 |
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r-babelgene
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public |
Genomic analysis of model organisms frequently requires the use of databases based on human data or making comparisons to patient-derived resources. This requires harmonization of gene names into the same gene space. The 'babelgene' R package converts between human and non-human gene orthologs/homologs. The package integrates orthology assertion predictions sourced from multiple databases as compiled by the HGNC Comparison of Orthology Predictions (HCOP) (Wright et al. 2005 <doi:10.1007/s00335-005-0103-2>, Eyre et al. 2007 <doi:10.1093/bib/bbl030>, Seal et al. 2011 <doi:10.1093/nar/gkq892>).
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2024-01-16 |
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r-bacprior
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public |
The Bayesian Adjustment for Confounding (BAC) algorithm (Wang et al., 2012) can be used to estimate the causal effect of a continuous exposure on a continuous outcome. This package provides an approximate sensitivity analysis of BAC with regards to the hyperparameter omega. BACprior also provides functions to guide the user in their choice of an appropriate omega value. The method is based on Lefebvre, Atherton and Talbot (2014).
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2024-01-16 |
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r-babelwhale
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public |
Provides a unified interface to interact with 'docker' and 'singularity' containers. You can execute a command inside a container, mount a volume or copy a file.
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2024-01-16 |
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r-backtest
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public |
The backtest package provides facilities for exploring portfolio-based conjectures about financial instruments (stocks, bonds, swaps, options, et cetera).
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2024-01-16 |
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r-backpipe
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public |
Provides a backward-pipe operator for 'magrittr' (%<%) or 'pipeR' (%<<%) that allows for a performing operations from right-to-left. This allows writing more legible code where right-to-left ordering is natural. This is common with hierarchies and nested structures such as trees, directories or markup languages (e.g. HTML and XML). The package also includes a R-Studio add-in that can be bound to a keyboard shortcut.
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2024-01-16 |
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r-azurestor
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public |
Manage storage in Microsoft's 'Azure' cloud: <https://azure.microsoft.com/en-us/product-categories/storage/>. On the admin side, 'AzureStor' includes features to create, modify and delete storage accounts. On the client side, it includes an interface to blob storage, file storage, and 'Azure Data Lake Storage Gen2': upload and download files and blobs; list containers and files/blobs; create containers; and so on. Authenticated access to storage is supported, via either a shared access key or a shared access signature (SAS). Part of the 'AzureR' family of packages.
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2024-01-16 |
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r-azurevmmetadata
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public |
A simple interface to the instance metadata for a virtual machine running in Microsoft's 'Azure' cloud. This provides information about the VM's configuration, such as its processors, memory, networking, storage, and so on. Part of the 'AzureR' family of packages.
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2024-01-16 |
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r-azurekusto
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public |
An interface to 'Azure Data Explorer', also known as 'Kusto', a fast, distributed data exploration service from Microsoft: <https://azure.microsoft.com/en-us/products/data-explorer/>. Includes 'DBI' and 'dplyr' interfaces, with the latter modelled after the 'dbplyr' package, whereby queries are translated from R into the native 'KQL' query language and executed lazily. On the admin side, the package extends the object framework provided by 'AzureRMR' to support creation and deletion of databases, and management of database principals. Part of the 'AzureR' family of packages.
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2024-01-16 |
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r-azurermr
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public |
A lightweight but powerful R interface to the 'Azure Resource Manager' REST API. The package exposes a comprehensive class framework and related tools for creating, updating and deleting 'Azure' resource groups, resources and templates. While 'AzureRMR' can be used to manage any 'Azure' service, it can also be extended by other packages to provide extra functionality for specific services. Part of the 'AzureR' family of packages.
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2024-01-16 |
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r-azuremlsdk
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public |
Interface to the 'Azure Machine Learning' Software Development Kit ('SDK'). Data scientists can use the 'SDK' to train, deploy, automate, and manage machine learning models on the 'Azure Machine Learning' service. To learn more about 'Azure Machine Learning' visit the website: <https://docs.microsoft.com/en-us/azure/machine-learning/service/overview-what-is-azure-ml>.
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2024-01-16 |
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r-azurekeyvault
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public |
Manage keys, certificates, secrets, and storage accounts in Microsoft's 'Key Vault' service: <https://azure.microsoft.com/services/key-vault/>. Provides facilities to store and retrieve secrets, use keys to encrypt, decrypt, sign and verify data, and manage certificates. Integrates with the 'AzureAuth' package to enable authentication with a certificate, and with the 'openssl' package for importing and exporting cryptographic objects. Part of the 'AzureR' family of packages.
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2024-01-16 |
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r-azureauth
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public |
Provides Azure Active Directory (AAD) authentication functionality for R users of Microsoft's 'Azure' cloud <https://azure.microsoft.com/>. Use this package to obtain 'OAuth' 2.0 tokens for services including Azure Resource Manager, Azure Storage and others. It supports both AAD v1.0 and v2.0, as well as multiple authentication methods, including device code and resource owner grant. Tokens are cached in a user-specific directory obtained using the 'rappdirs' package. The interface is based on the 'OAuth' framework in the 'httr' package, but customised and streamlined for Azure. Part of the 'AzureR' family of packages.
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2024-01-16 |
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r-azurecontainers
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public |
An interface to container functionality in Microsoft's 'Azure' cloud: <https://azure.microsoft.com/en-us/product-categories/containers/>. Manage 'Azure Container Instance' (ACI), 'Azure Container Registry' (ACR) and 'Azure Kubernetes Service' (AKS) resources, push and pull images, and deploy services. On the client side, lightweight shells to the 'docker', 'docker-compose', 'kubectl' and 'helm' commandline tools are provided. Part of the 'AzureR' family of packages.
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2024-01-16 |
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r-azuregraph
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public |
A simple interface to the 'Microsoft Graph' API <https://learn.microsoft.com/en-us/graph/overview>. 'Graph' is a comprehensive framework for accessing data in various online Microsoft services. This package was originally intended to provide an R interface only to the 'Azure Active Directory' part, with a view to supporting interoperability of R and 'Azure': users, groups, registered apps and service principals. However it has since been expanded into a more general tool for interacting with Graph. Part of the 'AzureR' family of packages.
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2024-01-16 |
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r-aws.translate
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public |
A client for 'AWS Translate' <https://aws.amazon.com/documentation/translate>, a machine translation service that will convert a text input in one language into a text output in another language.
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2024-01-16 |
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r-aws.transcribe
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public |
Client for 'AWS Transcribe' <https://aws.amazon.com/documentation/transcribe>, a cloud transcription service that can convert an audio media file in English and other languages into a text transcript.
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2024-01-16 |
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r-aws.signature
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public |
Generates version 2 and version 4 request signatures for Amazon Web Services ('AWS') <https://aws.amazon.com/> Application Programming Interfaces ('APIs') and provides a mechanism for retrieving credentials from environment variables, 'AWS' credentials files, and 'EC2' instance metadata. For use on 'EC2' instances, users will need to install the suggested package 'aws.ec2metadata' <https://cran.r-project.org/package=aws.ec2metadata>.
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2024-01-16 |
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r-aws.s3
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public |
A simple client package for the Amazon Web Services ('AWS') Simple Storage Service ('S3') 'REST' 'API' <https://aws.amazon.com/s3/>.
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2024-01-16 |
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r-aws.lambda
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public |
A simple client package for the Amazon Web Services ('AWS') Lambda API <https://aws.amazon.com/lambda/>.
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2024-01-16 |
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r-aws.iam
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public |
A simple client for the Amazon Web Services ('AWS') Identity and Access Management ('IAM') 'API' <https://aws.amazon.com/iam/>.
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2024-01-16 |
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r-aws.kms
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public |
Client package for the 'AWS Key Management Service' <https://aws.amazon.com/kms/>, a cloud service for managing encryption keys.
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2024-01-16 |
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r-autostsm
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public |
Automatic model selection for structural time series decomposition into trend, cycle, and seasonal components, plus optionality for structural interpolation, using the Kalman filter. Koopman, Siem Jan and Marius Ooms (2012) "Forecasting Economic Time Series Using Unobserved Components Time Series Models" <doi:10.1093/oxfordhb/9780195398649.013.0006>. Kim, Chang-Jin and Charles R. Nelson (1999) "State-Space Models with Regime Switching: Classical and Gibbs-Sampling Approaches with Applications" <doi:10.7551/mitpress/6444.001.0001><http://econ.korea.ac.kr/~cjkim/>.
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2024-01-16 |
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r-aws.ec2metadata
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public |
Retrieve Amazon EC2 instance metadata from within the running instance.
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2024-01-16 |
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r-aws.comprehend
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public |
Client for 'AWS Comprehend' <https://aws.amazon.com/comprehend>, a cloud natural language processing service that can perform a number of quantitative text analyses, including language detection, sentiment analysis, and feature extraction.
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2024-01-16 |
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r-awr
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public |
Installs the compiled Java modules of the Amazon Web Services ('AWS') 'SDK' to be used in downstream R packages interacting with 'AWS'. See <https://aws.amazon.com/sdk-for-java> for more information on the 'AWS' 'SDK' for Java.
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2024-01-16 |
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r-aweek
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public |
Which day a week starts depends heavily on the either the local or professional context. This package is designed to be a lightweight solution to easily switching between week-based date definitions.
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2024-01-16 |
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r-averisk
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public |
Average population attributable fractions are calculated for a set of risk factors (either binary or ordinal valued) for both prospective and case- control designs. Confidence intervals are found by Monte Carlo simulation. The method can be applied to either prospective or case control designs, provided an estimate of disease prevalence is provided. In addition to an exact calculation of AF, an approximate calculation, based on randomly sampling permutations has been implemented to ensure the calculation is computationally tractable when the number of risk factors is large.
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2024-01-16 |
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r-autoreg
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public |
Make summary tables for descriptive statistics and select explanatory variables automatically in various regression models. Support linear models, generalized linear models and cox-proportional hazard models. Generate publication-ready tables summarizing result of regression analysis and plots. The tables and plots can be exported in "HTML", "pdf('LaTex')", "docx('MS Word')" and "pptx('MS Powerpoint')" documents.
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2024-01-16 |
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r-autocogs
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public |
Automatically calculates cognostic groups for plot objects and list column plot objects. Results are returned in a nested data frame.
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2024-01-16 |
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r-automap
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public |
An automatic interpolation is done by automatically estimating the variogram and then calling gstat. An overview is given by Hiemstra et al (2008) <doi:10.1016/j.cageo.2008.10.011>.
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2024-01-16 |
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r-autoshiny
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public |
Static code compilation of a 'shiny' app given an R function (into 'ui.R' and 'server.R' files or into a 'shiny' app object). See examples at <https://github.com/alekrutkowski/autoshiny>.
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2024-01-16 |
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r-autoregressionmde
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public |
Consider autoregressive model of order p where the distribution function of innovation is unknown, but innovations are independent and symmetrically distributed. The package contains a function named ARMDE which takes X (vector of n observations) and p (order of the model) as input argument and returns minimum distance estimator of the parameters in the model.
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2024-01-16 |
