|
r-regexselect
|
public |
'shiny' extension that adds regular expression filtering capabilities to the choice vector of the select list.
|
2025-03-25 |
|
r-regexpipes
|
public |
Provides wrappers around base::grep() where the first argument is standardized to take the data object. This makes it less of a pain to use regular expressions with 'magrittr' or other pipe operators.
|
2025-03-25 |
|
r-regent
|
public |
Produces population distribution of disease risk and statistical risk categories, and predicts risks for individuals with genotype information.
|
2025-03-25 |
|
r-regclust
|
public |
This package clusters regression coefficients using the methods of clustering through linear regression models (CLM) (Qin and Self 2006). Maximum likelihood approach is used to infer the parameters for each cluster. Bayesian information criterion (BIC) combined with Bootstrapped maximum volume (BMV) criterion are used to determine the number of clusters.
|
2025-03-25 |
|
r-refset
|
public |
Provides subsets with reference semantics, i.e. subsets which automatically reflect changes in the original object, and which optionally update the original object when they are changed.
|
2025-03-25 |
|
r-refnr
|
public |
A tool for refining data frame with formulas.
|
2025-03-25 |
|
r-refmanager
|
public |
Provides tools for importing and working with bibliographic references. It greatly enhances the 'bibentry' class by providing a class 'BibEntry' which stores 'BibTeX' and 'BibLaTeX' references, supports 'UTF-8' encoding, and can be easily searched by any field, by date ranges, and by various formats for name lists (author by last names, translator by full names, etc.). Entries can be updated, combined, sorted, printed in a number of styles, and exported. 'BibTeX' and 'BibLaTeX' '.bib' files can be read into 'R' and converted to 'BibEntry' objects. Interfaces to 'NCBI Entrez', 'CrossRef', and 'Zotero' are provided for importing references and references can be created from locally stored 'PDF' files using 'Poppler'. Includes functions for citing and generating a bibliography with hyperlinks for documents prepared with 'RMarkdown' or 'RHTML'.
|
2025-03-25 |
|
r-reffreeewas
|
public |
Reference-free method for conducting EWAS while deconvoluting DNA methylation arising as mixtures of cell types. The older method (Houseman et al., 2014,<doi:10.1093/bioinformatics/btu029>) is similar to surrogate variable analysis (SVA and ISVA), except that it makes additional use of a biological mixture assumption. The newer method (Houseman et al., 2016, <doi:10.1186/s12859-016-1140-4>) is similar to non-negative matrix factorization, with additional constraints and additional utilities.
|
2025-03-25 |
|
r-reemtree
|
public |
A data mining approach for longitudinal and clustered data, which combines the structure of mixed effects model with tree-based estimation methods. See Sela, R.J. and Simonoff, J.S. (2012) RE-EM trees: a data mining approach for longitudinal and clustered data <doi:10.1007/s10994-011-5258-3>.
|
2025-03-25 |
|
r-redmonder
|
public |
Provide color schemes for maps (and other graphics) based on the color palettes of several Microsoft(r) products. Forked from 'RColorBrewer' v1.1-2.
|
2025-03-25 |
|
r-redas
|
public |
Provides functions used in the 'R: Einführung durch angewandte Statistik' (second edition).
|
2025-03-25 |
|
r-records
|
public |
Functions for generating k-record values and k-record times
|
2025-03-25 |
|
r-recorder
|
public |
A lightweight toolkit to validate new observations when computing their predictions with a predictive model. The validation process consists of two steps: (1) record relevant statistics and meta data of the variables in the original training data for the predictive model and (2) use these data to run a set of basic validation tests on the new set of observations.
|
2025-03-25 |
|
r-recombinator
|
public |
Turns nested lists into data.frames in an orderly manner.
|
2025-03-25 |
|
r-recoder
|
public |
Simple, easy to use, and flexible functionality for recoding variables. It allows for simple piecewise definition of transformations.
|
2025-03-25 |
|
r-recipa
|
public |
Pathways in a database could have many redundancies among them. This package allows the user to set a maximum value for the proportion of these redundancies.
|
2025-03-25 |
|
r-rechonest
|
public |
The 'Echo nest' <http://the.echonest.com> is the industry's leading music intelligence company, providing developer with deepest understanding of music content and music fans. This package can be used to access artist's data including songs, blogs, news, reviews etc. Song's data including audio summary, style, danceability, tempo etc can also be accessed.
|
2025-03-25 |
|
r-reca
|
public |
Relevant Component Analysis (RCA) tries to find a linear transformation of the feature space such that the effect of irrelevant variability is reduced in the transformed space.
|
2025-03-25 |
|
r-rebus.base
|
public |
Build regular expressions piece by piece using human readable code. This package contains core functionality, and is primarily intended to be used by package developers.
|
2025-03-25 |
|
r-reat
|
public |
Collection of models and analysis methods used in regional and urban economics and (quantitative) economic geography, e.g. measures of inequality, regional disparities and convergence, regional specialization as well as accessibility and spatial interaction models.
|
2025-03-25 |
|
r-rearrangement
|
public |
The rearrangement operator (Hardy, Littlewood, and Polya 1952) for univariate, bivariate, and trivariate point estimates of monotonic functions. The package additionally provides a function that creates simultaneous confidence intervals for univariate functions and applies the rearrangement operator to these confidence intervals.
|
2025-03-25 |
|
r-reams
|
public |
Resampling methods for adaptive linear model selection. These can be thought of as extensions of the Akaike information criterion that account for searching among candidate models.
|
2025-03-25 |
|
r-readoffice
|
public |
Reads in text from 'unstructured' modern Microsoft Office files (XML based files) such as Word and PowerPoint. This does not read in structured data (from Excel or Access) as there are many other great packages to that do so already.
|
2025-03-25 |
|
r-readmzxmldata
|
public |
Functions for reading mass spectrometry data in mzXML format.
|
2025-03-25 |
|
r-readmnist
|
public |
You can use the function Read.mnist() to read data and arrange them properly from MNIST dataset (the open handwriting digit database <http://yann.lecun.com/exdb/mnist/>). With this package, you can conveniently get all of necessary informations and then immediately start to check whether your machine learning algorithm works well. It can automatically recognize the type of dataset and returns the informations in corresponding structure.
|
2025-03-25 |
|
r-readmldata
|
public |
Functions for reading data sets in different formats for testing machine learning tools are provided. This allows to run a loop over several data sets in their original form, for example if they are downloaded from UCI Machine Learning Repository. The data are not part of the package and have to be downloaded separately.
|
2025-03-25 |
|
r-readjdx
|
public |
Import data written in the JCAMP-DX format. This is an instrument-independent format used in the field of spectroscopy. Examples include IR, NMR, and Raman spectroscopy. See the vignette for background and supported formats. The official JCAMP-DX site is <http://www.jcamp-dx.org/>.
|
2025-03-25 |
|
r-readhac
|
public |
Read Acoustic HAC format.
|
2025-03-25 |
|
r-read.gb
|
public |
Opens complete record(s) with .gb extension from the NCBI/GenBank Nucleotide database and returns a list containing shaped record(s). These kind of files contains detailed records of DNA samples (locus, organism, type of sequence, source of the sequence...). An example of record can be found at <https://www.ncbi.nlm.nih.gov/nuccore/HE799070>.
|
2025-03-25 |
|
r-readbulk
|
public |
Combine multiple data files from a common directory. The data files will be read into R and bound together, creating a single large data.frame. A general function is provided along with a specific function for data that was collected using the open-source experiment builder 'OpenSesame' <https://osdoc.cogsci.nl/>.
|
2025-03-25 |
|
r-readbrukerflexdata
|
public |
Reads data files acquired by Bruker Daltonics' matrix-assisted laser desorption/ionization-time-of-flight mass spectrometer of the *flex series.
|
2025-03-25 |
|
r-readabf
|
public |
Loads Axon Binary Files (both 'ABF' and 'ABF2') created by Axon Instruments/Molecular Devices software such as 'pClamp'.
|
2025-03-25 |
|
r-reactr
|
public |
Make it easy to use 'React' in R with 'htmlwidget' scaffolds, helper dependency functions, an embedded 'Babel' 'transpiler', and examples.
|
2025-03-25 |
|
r-reactlog
|
public |
Building interactive web applications with R is incredibly easy with 'shiny'. Behind the scenes, 'shiny' builds a reactive graph that can quickly become intertwined and difficult to debug. 'reactlog' (Schloerke 2019) <doi:10.5281/zenodo.2591517> provides a visual insight into that black box of 'shiny' reactivity by constructing a directed dependency graph of the application's reactive state at any time point in a reactive recording.
|
2025-03-25 |
|
r-rdstreeboot
|
public |
A tree bootstrap method for estimating uncertainty in respondent-driven samples (RDS). Quantiles are estimated by multilevel resampling in such a way that preserves the dependencies of and accounts for the high variability of the RDS process.
|
2025-03-25 |
|
r-rdstk
|
public |
This package provides an R interface to Pete Warden's Data Science Toolkit. See www.datasciencetoolkit.org for more information. The source code for this package can be found at github.com/rtelmore/RDSTK Happy hacking!
|
2025-03-25 |
|
r-rdroolsjars
|
public |
External jars required for package 'Rdrools'.
|
2025-03-25 |
|
r-rdrobust
|
public |
Regression-discontinuity (RD) designs are quasi-experimental research designs popular in social, behavioral and natural sciences. The RD design is usually employed to study the (local) causal effect of a treatment, intervention or policy. This package provides tools for data-driven graphical and analytical statistical inference in RD designs: rdrobust() to construct local-polynomial point estimators and robust confidence intervals for average treatment effects at the cutoff in Sharp, Fuzzy and Kink RD settings, rdbwselect() to perform bandwidth selection for the different procedures implemented, and rdplot() to conduct exploratory data analysis (RD plots).
|
2025-03-25 |
|
r-rdota2
|
public |
An R API Client for Valve's Dota2. RDota2 can be easily used to connect to the Steam API and retrieve data for Valve's popular video game Dota2. You can find out more about Dota2 at <http://store.steampowered.com/app/570/>.
|
2025-03-25 |
|
r-rdocumentation
|
public |
Wraps around the default help functionality in R. Instead of plain documentation files, documentation will show up as it does on <https://www.rdocumentation.org>, a platform that shows R documentation from 'CRAN', 'GitHub' and 'Bioconductor', together with informative stats to assess the package quality.
|
2025-03-25 |
|
r-rdnb
|
public |
A wrapper for the 'Deutsche Nationalbibliothek (German National Library) API', available at <https://www.dnb.de/EN/Home/home_node.html>. The German National Library is the German central archival library, collecting, archiving, bibliographically classifying all German and German-language publications, foreign publications about Germany, translations of German works, and the works of German-speaking emigrants published abroad between 1933 and 1945.
|
2025-03-25 |
|
r-rdnase
|
public |
Comprehensive toolkit for generating various numerical representation schemes of DNA sequence. The descriptors and similarity scores included are extensively used in bioinformatics and chemogenomics.
|
2025-03-25 |
|
r-rdistance
|
public |
Distance-sampling analyses estimate density and abundance of organisms in ecology when detection probability declines with increasing distance from the observers. Distance-sampling is popular in most branches of ecology and especially when organisms are observed from aerial platforms (e.g., airplane or drone), surface vessels (e.g., boat or truck), or along walking transects. Rdistance analyzes data collected on both point and line transects, estimates overall (study area) and site-level (transect or point) density, and allows users to specify regression-like formula (similar to lm or glm) for covariates. A large suite of classical, parametric detection functions are included along with some uncommon parametric functions (e.g., Gamma, negative exponential) and non-parametric smoothed distance functions. Custom (user-defined) detection functions can be implemented (see vignette). Measurement unit integrity is enforced with internal unit conversion when necessary. The help files and vignettes have been vetted by multiple authors and tested in workshop settings.
|
2025-03-25 |
|
r-rdidq
|
public |
The package has many function that helps to perform various quality check on the data.It basically provides many function that helps in performing Extrapolative data analysis.
|
2025-03-25 |
|
r-rdice
|
public |
A collection of functions to simulate dice rolls and the like. In particular, experiments and exercises can be performed looking at combinations and permutations of values in dice rolls and coin flips, together with the corresponding frequencies of occurrences. When applying each function, the user has to input the number of times (rolls, flips) to toss the dice. Needless to say, the more the tosses, the more the frequencies approximate the actual probabilities. Moreover, the package provides functions to generate non-transitive sets of dice (like Efron's) and to check whether a given set of dice is non-transitive with given probability.
|
2025-03-25 |
|
r-rdian
|
public |
A client library for 'The Guardian' (https://www.guardian.com/) and their API, this package allows users to search for Guardian articles and retrieve both the content and metadata.
|
2025-03-25 |
|
r-r.devices
|
public |
Functions for creating plots and image files in a unified way regardless of output format (EPS, PDF, PNG, SVG, TIFF, WMF, etc.). Default device options as well as scales and aspect ratios are controlled in a uniform way across all device types. Switching output format requires minimal changes in code. This package is ideal for large-scale batch processing, because it will never leave open graphics devices or incomplete image files behind, even on errors or user interrupts.
|
2025-03-25 |
|
r-rdetools
|
public |
The package provides functions for estimating the relevant dimension of a data set in feature spaces, applications to model selection, graphical illustrations and prediction.
|
2025-03-25 |
|
r-rde
|
public |
Allows caching of raw data directly in R code. This allows R scripts and R Notebooks to be shared and re-run on a machine without access to the original data. Cached data is encoded into an ASCII string that can be pasted into R code. When the code is run, the data is automatically loaded from the cached version if the original data file is unavailable. Works best for small datasets (a few hundred observations).
|
2025-03-25 |
|
r-rdbnomics
|
public |
R access to hundreds of millions data series from DBnomics API (<https://db.nomics.world/>).
|
2025-03-25 |
