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r-rticles
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public |
A suite of custom R Markdown formats and templates for authoring journal articles and conference submissions.
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2024-01-16 |
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r-rtika
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public |
Extract text or metadata from over a thousand file types, using Apache Tika <https://tika.apache.org/>. Get either plain text or structured XHTML content.
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2024-01-16 |
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r-rtnmin
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public |
Truncated Newton function minimization with bounds constraints based on the 'Matlab'/'Octave' codes of Stephen Nash.
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2024-01-16 |
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r-rsyntax
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public |
Various functions for querying and reshaping dependency trees, as for instance created with the 'spacyr' or 'udpipe' packages. This enables the automatic extraction of useful semantic relations from texts, such as quotes (who said what) and clauses (who did what). Method proposed in Van Atteveldt et al. (2017) <doi:10.1017/pan.2016.12>.
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2024-01-16 |
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r-rtf
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public |
A set of R functions to output Rich Text Format (RTF) files with high resolution tables and graphics that may be edited with a standard word processor such as Microsoft Word.
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2024-01-16 |
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r-rtephra
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public |
Models and displays tephra transport through custom (windy, turbulent, heterogeneous) atmosphere over custom topography. Includes a Lagrangian (particle-tracking) tephra transport model and a function to save snapshots of model as png files.
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2024-01-16 |
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r-rtensor
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public |
A set of tools for creation, manipulation, and modeling of tensors with arbitrary number of modes. A tensor in the context of data analysis is a multidimensional array. rTensor does this by providing a S4 class 'Tensor' that wraps around the base 'array' class. rTensor provides common tensor operations as methods, including matrix unfolding, summing/averaging across modes, calculating the Frobenius norm, and taking the inner product between two tensors. Familiar array operations are overloaded, such as index subsetting via '[' and element-wise operations. rTensor also implements various tensor decomposition, including CP, GLRAM, MPCA, PVD, and Tucker. For tensors with 3 modes, rTensor also implements transpose, t-product, and t-SVD, as defined in Kilmer et al. (2013). Some auxiliary functions include the Khatri-Rao product, Kronecker product, and the Hadamard product for a list of matrices.
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2024-01-16 |
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r-rtematres
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public |
Exploit controlled vocabularies organized on tematres servers.
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2024-01-16 |
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r-rtaxometrics
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We provide functions to perform taxometric analyses. This package contains 46 functions, but only 5 should be called directly by users. CheckData() should be run prior to any taxometric analysis to ensure that the data are appropriate for taxometric analysis. RunTaxometrics() performs taxometric analyses for a sample of data. RunCCFIProfile() performs a series of taxometric analyses to generate a CCFI profile. CreateData() generates a sample of categorical or dimensional data. ClassifyCases() assigns cases to groups using the base-rate classification method.
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2024-01-16 |
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r-rtde
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public |
Robust tail dependence estimation for bivariate models. This package is based on two papers by the authors:'Robust and bias-corrected estimation of the coefficient of tail dependence' and 'Robust and bias-corrected estimation of probabilities of extreme failure sets'. This work was supported by a research grant (VKR023480) from VILLUM FONDEN and an international project for scientific cooperation (PICS-6416).
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2024-01-16 |
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r-rstac
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public |
Provides functions to access, search and download spacetime earth observation data via SpatioTemporal Asset Catalog (STAC). This package supports the version 1.0.0 (and older) of the STAC specification (<https://github.com/radiantearth/stac-spec>). For further details see Simoes et al. (2021) <doi:10.1109/IGARSS47720.2021.9553518>.
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2024-01-16 |
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r-rtauchen
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public |
Discretize AR(1) process following Tauchen (1986) <http://www.sciencedirect.com/science/article/pii/0165176586901680>. A discrete Markov chain that approximates in the sense of weak convergence a continuous-valued univariate Autoregressive process of first order is generated. It is a popular method used in economics and in finance.
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2024-01-16 |
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r-rtape
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public |
Storing huge data in RData format causes problems because of the necessity to load the whole file to the memory in order to access and manipulate objects inside such file; rtape is a simple solution to this problem. The package contains several wrappers of R built-in serialize/unserialize mechanism allowing user to quickly append objects to a tape-like file and later iterate over them requiring only one copy of each stored object to reside in memory a time.
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2024-01-16 |
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r-rt3
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public |
Play the classic game of tic-tac-toe (naughts and crosses).
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2024-01-16 |
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r-rsvd
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public |
Low-rank matrix decompositions are fundamental tools and widely used for data analysis, dimension reduction, and data compression. Classically, highly accurate deterministic matrix algorithms are used for this task. However, the emergence of large-scale data has severely challenged our computational ability to analyze big data. The concept of randomness has been demonstrated as an effective strategy to quickly produce approximate answers to familiar problems such as the singular value decomposition (SVD). The rsvd package provides several randomized matrix algorithms such as the randomized singular value decomposition (rsvd), randomized principal component analysis (rpca), randomized robust principal component analysis (rrpca), randomized interpolative decomposition (rid), and the randomized CUR decomposition (rcur). In addition several plot functions are provided.
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2024-01-16 |
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r-rt.test
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Performs one-sample t-test based on robustified statistics using median/MAD (TA) and Hodges-Lehmann/Shamos (TB). For more details, see Park and Wang (2018)<arXiv:1807.02215>. This work was partially supported by the National Research Foundation of Korea (NRF) grant funded by the Korea government (No. NRF-2017R1A2B4004169).
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2024-01-16 |
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r-rsolnp
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public |
General Non-linear Optimization Using Augmented Lagrange Multiplier Method.
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2024-01-16 |
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r-rsubgroup
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public |
A collection of efficient and effective tools and algorithms for subgroup discovery and analytics. The package integrates an R interface to the org.vikamine.kernel library of the VIKAMINE system <http://www.vikamine.org> implementing subgroup discovery, pattern mining and analytics in Java.
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2024-01-16 |
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r-rsurrogate
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public |
Provides functions to estimate the proportion of treatment effect on the primary outcome that is explained by the treatment effect on the surrogate marker.
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2024-01-16 |
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r-rstudioapi
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None |
Access the RStudio API (if available) and provide informative error messages when it's not.
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2024-01-16 |
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r-rstorm
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While streaming processing provides opportunities to deal with extremely large and ever growing data sets in (near) real time, the development of streaming algorithms for complex models is often cumbersome: the software packages that facilitate streaming processing in production environments do not provide statisticians with the simulation, estimation, and plotting tools they are used to. Developers of streaming algorithms would thus benefit from the flexibility of [R] to create, plot and compute data while developing streaming algorithms. Package RStorm implements a streaming architecture modeled on Storm for easy development and testing of streaming algorithms in [R]. RStorm is not intended as a production package, but rather a development tool for streaming algorithms.
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2024-01-16 |
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r-rstatscn
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public |
R interface for china national data <http://data.stats.gov.cn/>, some convenient functions for accessing the national data are provided.
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2024-01-16 |
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r-rstatix
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public |
Provides a simple and intuitive pipe-friendly framework, coherent with the 'tidyverse' design philosophy, for performing basic statistical tests, including t-test, Wilcoxon test, ANOVA, Kruskal-Wallis and correlation analyses. The output of each test is automatically transformed into a tidy data frame to facilitate visualization. Additional functions are available for reshaping, reordering, manipulating and visualizing correlation matrix. Functions are also included to facilitate the analysis of factorial experiments, including purely 'within-Ss' designs (repeated measures), purely 'between-Ss' designs, and mixed 'within-and-between-Ss' designs. It's also possible to compute several effect size metrics, including "eta squared" for ANOVA, "Cohen's d" for t-test and 'Cramer V' for the association between categorical variables. The package contains helper functions for identifying univariate and multivariate outliers, assessing normality and homogeneity of variances.
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2024-01-16 |
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r-rstata
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public |
A simple R -> Stata interface allowing the user to execute Stata commands (both inline and from a .do file) from R.
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2024-01-16 |
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r-rstantools
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public |
Provides various tools for developers of R packages interfacing with 'Stan' <https://mc-stan.org>, including functions to set up the required package structure, S3 generics and default methods to unify function naming across 'Stan'-based R packages, and vignettes with recommendations for developers.
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2024-01-16 |
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r-rssop
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public |
Reservoir Systems Standard Operation Policy. A system for simulation of supply reservoirs. It proposes functionalities for plotting and evaluation of supply reservoirs systems.
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2024-01-16 |
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r-rstackdeque
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public |
Provides fast, persistent (side-effect-free) stack, queue and deque (double-ended-queue) data structures. While deques include a superset of functionality provided by queues, in these implementations queues are more efficient in some specialized situations. See the documentation for rstack, rdeque, and rpqueue for details.
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2024-01-16 |
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r-rstack
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public |
An extremely simple stack data type, implemented with 'R6' classes. The size of the stack increases as needed, and the amortized time complexity is O(1). The stack may contain arbitrary objects.
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2024-01-16 |
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r-rselenium
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public |
Provides a set of R bindings for the 'Selenium 2.0 WebDriver' (see <https://www.selenium.dev/documentation/> for more information) using the 'JsonWireProtocol' (see <https://github.com/SeleniumHQ/selenium/wiki/JsonWireProtocol> for more information). 'Selenium 2.0 WebDriver' allows driving a web browser natively as a user would either locally or on a remote machine using the Selenium server it marks a leap forward in terms of web browser automation. Selenium automates web browsers (commonly referred to as browsers). Using RSelenium you can automate browsers locally or remotely.
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2024-01-16 |
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r-rsq
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public |
Calculate generalized R-squared, partial R-squared, and partial correlation coefficients for generalized linear (mixed) models (including quasi models with well defined variance functions).
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2024-01-16 |
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r-rspde
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public |
Functions that compute rational approximations of fractional elliptic stochastic partial differential equations. The package also contains functions for common statistical usage of these approximations. The main references for rSPDE are Bolin, Simas and Xiong (2023) <doi:10.1080/10618600.2023.2231051> for the covariance-based method and Bolin and Kirchner (2020) <doi:10.1080/10618600.2019.1665537> for the operator-based rational approximation. These can be generated by the citation function in R.
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2024-01-16 |
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r-rspincalc
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public |
Conversion between attitude representations: DCM, Euler angles, Quaternions, and Euler vectors. Plus conversion between 2 Euler angle set types (xyx, yzy, zxz, xzx, yxy, zyz, xyz, yzx, zxy, xzy, yxz, zyx). Fully vectorized code, with warnings/errors for Euler angles (singularity, out of range, invalid angle order), DCM (orthogonality, not proper, exceeded tolerance to unity determinant) and Euler vectors(not unity). Also quaternion and other useful functions. Based on SpinCalc by John Fuller and SpinConv by Paolo de Leva.
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2024-01-16 |
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r-rspc
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public |
Implementation of Nelson rules for control charts in 'R'. The 'Rspc' implements some Statistical Process Control methods, namely Levey-Jennings type of I (individuals) chart, Shewhart C (count) chart and Nelson rules (as described in Montgomery, D. C. (2013) Introduction to statistical quality control. Hoboken, NJ: Wiley.). Typical workflow is taking the time series, specify the control limits, and list of Nelson rules you want to evaluate. There are several options how to modify the rules (one sided limits, numerical parameters of rules, etc.). Package is also capable of calculating the control limits from the data (so far only for i-chart and c-chart are implemented).
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2024-01-16 |
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r-rsoi
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public |
Downloads Southern Oscillation Index, Oceanic Nino Index, North Pacific Gyre Oscillation data, North Atlantic Oscillation and Arctic Oscillation. Data sources are described in the help files for each function.
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2024-01-16 |
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r-rsocrata
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public |
Provides easier interaction with 'Socrata' open data portals <https://dev.socrata.com>. Users can provide a 'Socrata' data set resource URL, or a 'Socrata' Open Data API (SODA) web query, or a 'Socrata' "human-friendly" URL, returns an R data frame. Converts dates to 'POSIX' format and manages throttling by 'Socrata'. Users can upload data to 'Socrata' portals directly from R.
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2024-01-16 |
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r-rsmartlyio
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public |
Aims at loading Facebook and Instagram advertising data from 'Smartly.io' into R. 'Smartly.io' is an online advertising service that enables advertisers to display commercial ads on social media networks (see <http://www.smartly.io/> for more information). The package offers an interface to query the 'Smartly.io' API and loads data directly into R for further data processing and data analysis.
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2024-01-16 |
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r-rsm
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public |
Provides functions to generate response-surface designs, fit first- and second-order response-surface models, make surface plots, obtain the path of steepest ascent, and do canonical analysis. A good reference on these methods is Chapter 10 of Wu, C-F J and Hamada, M (2009) "Experiments: Planning, Analysis, and Parameter Design Optimization" ISBN 978-0-471-69946-0. An early version of the package is documented in Journal of Statistical Software <doi:10.18637/jss.v032.i07>.
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2024-01-16 |
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r-rslurm
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public |
Functions that simplify submitting R scripts to a 'Slurm' workload manager, in part by automating the division of embarrassingly parallel calculations across cluster nodes.
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2024-01-16 |
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r-rslp
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public |
Implements the "Stemming Algorithm for the Portuguese Language" <DOI:10.1109/SPIRE.2001.10024>.
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2024-01-16 |
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r-rsitecatalyst
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public |
Functions for interacting with the Adobe Analytics API V1.4 (<https://api.omniture.com/admin/1.4/rest/>).
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2024-01-16 |
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r-rskey
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public |
Create custom keyboard shortcuts to examine code selected in the 'Rstudio' editor. F3 can for example yield 'str(selection)' and F7 open the source code of CRAN and base package functions on 'github'.
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2024-01-16 |
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r-rsfa
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public |
Slow Feature Analysis (SFA), ported to R based on 'matlab' implementations of SFA: 'SFA toolkit' 1.0 by Pietro Berkes and 'SFA toolkit' 2.8 by Wolfgang Konen.
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2024-01-16 |
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r-rscopus
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public |
Uses Elsevier 'Scopus' API <https://dev.elsevier.com/sc_apis.html> to download information about authors and their citations.
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2024-01-16 |
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r-rsem
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public |
A robust procedure is implemented to estimate means and covariance matrix of multiple variables with missing data using Huber weight and then to estimate a structural equation model.
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2024-01-16 |
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r-rseedcalc
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public |
Estimate the percentage of seeds in a seedlot that contain stacks of genetically modified traits. Estimates are calculated using a multinomial group testing model with maximum likelihood estimation of the parameters.
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2024-01-16 |
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r-rsdmx
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public |
Set of classes and methods to read data and metadata documents exchanged through the Statistical Data and Metadata Exchange (SDMX) framework, currently focusing on the SDMX XML standard format (SDMX-ML).
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2024-01-16 |
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r-rse
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public |
A Bayesian-weighted estimator and two unweighted estimators are developed to estimate the number of newly found rare species in additional ecological samples. Among these methods, the Bayesian-weighted estimator and an unweighted (Chao-derived) estimator are of high accuracy and recommended for practical applications. Technical details of the proposed estimators have been well described in the following paper: Shen TJ, Chen YH (2018) A Bayesian weighted approach to predicting the number of newly discovered rare species. Conservation Biology, In press.
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2024-01-16 |
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r-rrtable
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public |
Makes documents containing plots and tables from a table of R codes. Can make "HTML", "pdf('LaTex')", "docx('MS Word')" and "pptx('MS Powerpoint')" documents with or without R code. In the package, modularized 'shiny' app codes are provided. These modules are intended for reuse across applications.
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2024-01-16 |
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r-rriskdistributions
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public |
Collection of functions for fitting distributions to given data or by known quantiles. Two main functions fit.perc() and fit.cont() provide users a GUI that allows to choose a most appropriate distribution without any knowledge of the R syntax. Note, this package is a part of the 'rrisk' project.
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2024-01-16 |
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r-rsca
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public |
A statistical tool for multivariate modeling and clustering using stepwise cluster analysis. The modeling output of rSCA is constructed as a cluster tree to represent the complicated relationships between multiple dependent and independent variables. A free tool (named rSCA Tree Generator) for visualizing the cluster tree from rSCA is also released and it can be downloaded at <https://rscatree.weebly.com/>.
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2024-01-16 |
