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r-activpalprocessing
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public |
Performs estimation of physical activity and sedentary behavior variables from activPAL (PAL Technologies, Glasgow, Scotland) events files. See <http://paltechnologies.com> for more information on the activPAL.
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2023-06-16 |
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r-artp
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public |
For calculating gene and pathway p-values using the Adaptive Rank Truncated Product test.
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2023-06-16 |
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r-barsurf
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public |
Produces heat maps, contour plots, bar plots (in 3D) and surface plots (also, in 3D). Is designed for plotting functions of two variables, however, can plot relatively arbitrary matrices. Uses HCL color space, extensively. Also, supports triangular plots and nested matrices.
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2023-06-16 |
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r-artiva
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public |
Reversible Jump MCMC (RJ-MCMC)sampling for approximating the posterior distribution of a time varying regulatory network, under the Auto Regressive TIme VArying (ARTIVA) model (for a detailed description of the algorithm, see Lebre et al. BMC Systems Biology, 2010). Starting from time-course gene expression measurements for a gene of interest (referred to as "target gene") and a set of genes (referred to as "parent genes") which may explain the expression of the target gene, the ARTIVA procedure identifies temporal segments for which a set of interactions occur between the "parent genes" and the "target gene". The time points that delimit the different temporal segments are referred to as changepoints (CP).
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2023-06-16 |
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r-apsrtable
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public |
Formats latex tables from one or more model objects side-by-side with standard errors below, not unlike tables found in such journals as the American Political Science Review.
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2023-06-16 |
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r-aspbay
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public |
This package allows to make inference on the properties of causal genetic variants in linkage disequilibrium with genotyped markers. In a first step, we select a subset of variants using a score statistic for affected sib-pairs. In a second step, on the selected subset, we make inference on causal genetic variants in the considered region.
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2023-06-16 |
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r-aucrf
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public |
Variable selection using Random Forest based on optimizing the area-under-the ROC curve (AUC) of the Random Forest.
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2023-06-16 |
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r-ameco
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public |
Annual macro-economic database provided by the European Commission.
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2023-06-16 |
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r-alphavantageclient
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public |
Download data from the Alpha Vantage API (<https://www.alphavantage.co/>). Alpha Vantage is a RESTful API which provides various financial data, including stock prices and technical indicators. There is documentation for the underlying API available here: <https://www.alphavantage.co/documentation/>. To get access to this API, the user needs to first claim an API key: <https://www.alphavantage.co/support/>.
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2023-06-16 |
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r-b2z
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public |
This package fits the Bayesian two-Zone Models.
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2023-06-16 |
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r-automultinomial
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public |
Fits the autologistic model described in Besag's famous 1974 paper on auto- models <http://www.jstor.org/stable/2984812>. Fits a multicategory generalization of the autologistic model when there are more than 2 response categories. Provides support for both asymptotic and bootstrap confidence intervals. For full model descriptions and a guide to the use of this package, please see the vignette.
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2023-06-16 |
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r-autoencoder
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public |
Implementation of the sparse autoencoder in R environment, following the notes of Andrew Ng (http://www.stanford.edu/class/archive/cs/cs294a/cs294a.1104/sparseAutoencoder.pdf). The features learned by the hidden layer of the autoencoder (through unsupervised learning of unlabeled data) can be used in constructing deep belief neural networks.
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2023-06-16 |
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r-argumentcheck
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public |
The typical process of checking arguments in functions is iterative. In this process, an error may be returned and the user may fix it only to receive another error on a different argument. 'ArgumentCheck' facilitates a more helpful way to perform argument checks allowing the programmer to run all of the checks and then return all of the errors and warnings in a single message.
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2023-06-16 |
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r-artp2
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public |
Pathway and gene level association test using raw data or summary statistics.
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2023-06-16 |
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r-amap.seq
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public |
An Approximated Most Average Powerful Test with Optimal FDR Control with Application to RNA-seq Data
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2023-06-16 |
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r-acclma
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public |
The main function is plotLMA(sourcefile,header) that takes a data set and plots the appropriate LMA and ACC graphs. If no sourcefile (a string) was passed, a manual data entry window is opened. The header parameter indicates by TRUE/FALSE (false by default) if the source CSV file has a head row or not. The data set should contain only one independent variable (X) and one dependent varialbe (Y) and can contain a weight for each observation
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2023-06-16 |
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r-aliner
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public |
Functions are provided to calculate the 'ALINE' Distance between words as per (Kondrak 2000) and (Downey, Hallmark, Cox, Norquest, & Lansing, 2008, <doi:10.1080/09296170802326681>). The score is based on phonetic features represented using the Unicode-compliant International Phonetic Alphabet (IPA). Parameterized features weights are used to determine the optimal alignment and functions are provided to estimate optimum values using a genetic algorithm and supervised learning. See (Downey, Sun, and Norquest 2017, <https://journal.r-project.org/archive/2017/RJ-2017-005/index.html>.
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2023-06-16 |
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r-baprestopro
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public |
Bayesian estimation and prediction for stochastic processes based on the Euler approximation. Considered processes are: jump diffusion, (mixed) diffusion models, hidden (mixed) diffusion models, non-homogeneous Poisson processes (NHPP), (mixed) regression models for comparison and a regression model including a NHPP.
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2023-06-16 |
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r-babar
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public |
Babar is designed to use nested sampling (a Bayesian analysis technique) to compare possible models for bacterial growth curves, as well as extracting parameters. It allows model evidence and parameter likelihood values to be extracted, and also contains helper functions for comparing distributions as well as direct access to the underlying nested sampling code.
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2023-06-16 |
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r-b6e6rl
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public |
This package contains b6e6rl algorithm, adaptive differential evolution for global optimization.
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2023-06-16 |
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r-anfis
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public |
The package implements ANFIS Type 3 Takagi and Sugeno's fuzzy if-then rule network with the following features: (1) Independent number of membership functions(MF) for each input, and also different MF extensible types. (2) Type 3 Takagi and Sugeno's fuzzy if-then rule (3) Full Rule combinations, e.g. 2 inputs 2 membership funtions -> 4 fuzzy rules (4) Hibrid learning, i.e. Descent Gradient for precedents and Least Squares Estimation for consequents (5) Multiple outputs.
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2023-06-16 |
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r-altmeta
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public |
Provides alternative statistical methods for meta-analysis, including new heterogeneity tests and measures that are robust to outliers.
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2023-06-16 |
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r-abf2
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public |
Loads ABF2 files containing gap-free data from electrophysiological recordings, as created by Axon Instruments/Molecular Devices software such as pClamp 10.
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2023-06-16 |
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r-barycenter
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public |
Computations of entropy regularized Wasserstein Distances, a.k.a. dual-Sinkhorn divergences, and entropy regularized Wasserstein Barycenters. Relevant papers are Marco Cuturi (2013) <arXiv:1306.0895>, Marco Cuturi (2014) <arXiv:1310.4375> and Jason Altschuler et al. <arXiv:1705.09634>.
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2023-06-16 |
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r-akmeans
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public |
Adaptive K-means algorithm with various threshold settings. It support two distance metric: Euclidean distance, Cosine distance (1 - cosine similarity) In version 1.1, it contains one more threshold condition.
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2023-06-16 |
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r-acmer
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public |
Implementation of estimator ACME, described in Wolpert (2015), ACME: A Partially Periodic Estimator of Avian & Chiropteran Mortality at Wind Turbines (submitted). Unlike most other models, this estimator supports decreasing-hazard Weibull model for persistence; decreasing search proficiency as carcasses age; variable bleed-through at successive searches; and interval mortality estimates. The package provides, based on search data, functions for estimating the mortality inflation factor in Frequentist and Bayesian settings.
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2023-06-16 |
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r-atsd
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public |
Provides functions for retrieving time-series and related meta-data such as entities, metrics, and tags from the Axibase Time-Series Database (ATSD). ATSD is a non-relational clustered database used for storing performance measurements from IT infrastructure resources: servers, network devices, storage systems, and applications.
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2023-06-16 |
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r-annotlists
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public |
Annotate multiple lists from a specific annotation file.
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2023-06-16 |
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r-acm4r
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public |
Fragment lengths or molecular weights from pairs of lanes are compared, and a number of matching bands are calculated using the Align-and-Count Method.
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2023-06-16 |
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r-xgboost-gpu
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public |
No Summary
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2023-06-16 |
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r-xgboost-cpu
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public |
No Summary
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2023-06-16 |
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mro-base_impl
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public |
R is a free software environment for statistical computing and graphics.
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2023-06-16 |
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r-mro
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public |
Computes multiple correlation coefficient when the data matrix is given and tests its significance.
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2023-06-16 |
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r-tkrgl
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public |
Provides 'TK' widget tools for the 'rgl' package.
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2023-06-16 |
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qt
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public |
Qt is a cross-platform application and UI framework.
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2023-06-16 |
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mro-base
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public |
R is a free software environment for statistical computing and graphics.
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2023-06-16 |
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_r-xgboost-mutex
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public |
No Summary
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2023-06-16 |
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rtools
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public |
No Summary
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2023-06-16 |
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r-essentials-mrclient
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public |
Essential R packages including MS R Client and MS Machine Learning
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2023-06-16 |
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r-mrclient
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public |
A free, community-supported, data science tool for high performance analytics
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2023-06-16 |
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r-revomods
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public |
Microsoft modifications and extensions to standard R functions
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2023-06-16 |
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_r-mutex
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public |
A mutex package to ensure environment exclusivity between Anaconda R and MRO.
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2023-06-16 |
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mro-basics
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public |
No Summary
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2023-06-16 |
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r-revoutils
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public |
Utility functions for Microsoft R
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2023-06-16 |
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r-mrclient-mml
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public |
Provides state-of-the-art fast, scalable machine learning algorithms and transforms for R
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2023-06-16 |
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r-microsoftr
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public |
Umbrella package with licenses and notices for all Microsoft R packages
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2023-06-16 |
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r-mrclient-mlm
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public |
Pre-trained machine learning models for sentiment analysis and image detection
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2023-06-16 |
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r-deployrrserve
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public |
Rserve acts as a socket server (TCP/IP or local sockets) which allows binary requests to be sent to R. Every connection has a separate workspace and working directory. Client-side implementations are available for popular languages such as C/C++ and Java, allowing any application to use facilities of R without the need of linking to R code. Rserve supports remote connection, user authentication and file transfer. A simple R client is included in this package as well.
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2023-06-16 |
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r-revoutilsmath
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public |
Utility functions for managing math threading.
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2023-06-16 |
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r-revoioq
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public |
Test suite for Microsoft R Services.
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2023-06-16 |
