predector
by Predector (Organization)
Packages and environments for the Predector pipeline.
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Packages
| Name | Latest Version | Summary | Updated | License |
|---|
| apoplastp | 1.0.1 | — | Mar 25, 2025 | GPL3 |
| bio | 1.5.9 | command-line utilities to make bioinformatics explorations more enjoyable. | Mar 25, 2025 | MIT |
| deeploc | 1.0 | — | Mar 25, 2025 | Proprietary |
| deeploc2 | 2.1.0 | A placeholder library to install DeepLoc. | Mar 25, 2025 | Proprietary |
| deepredeff-py | 0.0.1 | A python port of the R deepredeff pipeline. | Mar 25, 2025 | MIT |
| deepsig | 0f1e1d9 | — | Mar 25, 2025 | GPL3 |
| effectorp1 | 1.0 | — | Mar 25, 2025 | GPL3 |
| effectorp2 | 2.0 | — | Mar 25, 2025 | GPL3 |
| effectorp3 | 3.0 | Improved prediction of fungal effector proteins from secretomes with EffectorP 3.0 | Mar 25, 2025 | GPL3 |
| ffindex | 0.9.9.9 | — | Mar 25, 2025 | CC BY-SA 4.0 |
| lasagne | 0.2.dev1 | A lightweight library to build and train neural networks in Theano | Mar 25, 2025 | MIT |
| localizer | 1.0.4 | — | Mar 25, 2025 | GPL3 |
| phobius | 1.01 | — | Mar 25, 2025 | Proprietary |
| predectorutils | 0.9.2 | Utilities to run the predector pipeline. | Mar 25, 2025 | Apache License 2.0 |
| r-deepredeff | 0.1.1 | A tool that contains trained deep learning models for predicting effector proteins. 'deepredeff' has been trained to identify effector proteins using a set of known experimentally validated effectors from either bacteria, fungi, or oomycetes. Documentation is available via several vignettes, and the paper by Kristianingsih and MacLean (2020) <doi:10.1101/2020.07.08.193250>. | Mar 25, 2025 | MIT |
| signalp3 | 3.0b | — | Mar 25, 2025 | Proprietary |
| signalp4 | 4.1g | — | Mar 25, 2025 | Proprietary |
| signalp5 | 5.0b | — | Mar 25, 2025 | Proprietary |
| signalp6 | 6.0g | a placeholder library to install signalp versions 6. | Mar 25, 2025 | proprietary |
| targetp2 | 2.0 | — | Mar 25, 2025 | Proprietary |
| tmbed | 1.0.0 | TMbed predicts transmembrane beta barrel and alpha helical proteins, the position and orientation of their transmembrane segments, and signal peptides. | Mar 25, 2025 | Apache-2.0 |
| tmhmm | 2.0c | — | Mar 25, 2025 | Proprietary |