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pcgr / packages

Package Name Access Summary Updated
r-cpsr public Cancer Predisposition Sequencing Reporter 2025-03-25
r-pcgrr public Personal Cancer Genome ReporteR. Functions, tools and utilities for the generation of clinical cancer genome reports with PCGR. This R package is an integrated part of the Docker/Conda-based PCGR workflow (https://github.com/sigven/pcgr), it should thus not be used as a stand-alone package. 2025-03-25
cacao_dockerized public Callable Cancer Loci - assessment of sequencing coverage for actionable and pathogenic loci in cancer 2025-03-25
cacao public Callable Cancer Loci - assessment of sequencing coverage for actionable and pathogenic loci in cancer 2025-03-25
cpsr_dockerized public Cancer Predisposition Sequencing Reporter (CPSR) - prioritization of germline variants in cancer 2025-03-25
cpsr public Cancer Predisposition Sequencing Reporter (CPSR) - prioritization of germline variants in cancer 2025-03-25
pcgr_dockerized public Personal Cancer Genome Reporter (PCGR) - variant interpretation report for precision cancer medicine 2025-03-25
gdown public Google Drive direct download of big files. 2025-03-25
r-sunburstr public Make interactive 'd3.js' sequence sunburst diagrams in R with the convenience and infrastructure of an 'htmlwidget'. 2025-03-25
r-summarywidget public SummaryWidget displays a single statistic derived from a linked table. It's primary use is with the crosstalk package. Used with crosstalk, a summarywidget displays a value which updates as the data selection changes. 2025-03-25
r-rlogging public A simple logging facility that extends R's message(), warning(), and stop() functions. 2025-03-25
pcgr public None 2025-03-25
r-configr public Implements the JSON, INI, YAML and TOML parser for R setting and writing of configuration file. The functionality of this package is similar to that of package 'config'. 2025-03-25

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