| Package Name | Access | Summary | Updated |
|---|---|---|---|
| doxygen | public | Doxygen is the de facto standard tool for generating documentation from annotated C++ sources | 2025-03-25 |
| cclib | None | cclib: parsers and algorithms for computational chemistry | 2025-03-25 |
| ensembler-dev | None | Pipeline for automating omics-scale protein modeling and simulation setup. | 2025-03-25 |
| pymol | None | No Summary | 2025-03-25 |
| modeller | None | Comparative modeling by satisfaction of spatial restraints | 2025-03-25 |
| glew | None | No Summary | 2025-03-25 |
| freeglut | None | No Summary | 2025-03-25 |
| pyxb | None | PyXB ("pixbee") is a pure Python package that generates Python source code for classes that correspond to data structures defined by XMLSchema. | 2025-03-25 |
| msmtools | None | Tools for estimating and analyzing Markov state models | 2025-03-25 |
| parmed | None | A package for parsing, interconverting, manipulating, and simulating biomolecular simulations with many packages | 2025-03-25 |
| bhmm | None | Bayesian hidden Markov models for analysis of single-molecule trajectory data | 2025-03-25 |
| algopy | None | ALGOPY: Taylor Arithmetic Computation and Algorithmic Differentiation | 2025-03-25 |
| openmoltools | None | No Summary | 2025-03-25 |
| pyvisfile | None | Large-scale Visualization Data Storage | 2025-03-25 |
| pyublas | None | Seamless Numpy-UBlas interoperability | 2025-03-25 |
| silo | None | Silo is a library for reading and writing a wide variety of scientific data to binary, disk files. | 2025-03-25 |
| pytools | None | A collection of tools for Python | 2025-03-25 |
| boost | None | Boost provides free peer-reviewed portable C++ source libraries. | 2025-03-25 |
| appdirs | None | A small Python module for determining appropriate platform-specific dirs, e.g. a "user data dir". | 2025-03-25 |
| pytram | None | The TRAM package | 2025-03-25 |
| subprocess32 | None | Backport of the subprocess module from Python 3.2/3.3 for use on 2.x. | 2025-03-25 |
| ensembler | None | Pipeline for automating omics-scale protein modeling and simulation setup. | 2025-03-25 |
| svgwrite | None | A Python library to create SVG drawings. | 2025-03-25 |
| assaytools | None | A library for the modeling and analysis of plate-based assays (development snapshot) | 2025-03-25 |
| openpathsampling-dev | None | OpenPathSampling: A python package to do path sampling simulations | 2025-03-25 |
