| Package Name | Access | Summary | Updated |
|---|---|---|---|
| scs | None | scs: splittling cone solver | 2025-03-25 |
| ecos | None | A lightweight conic solver for second-order cone programming. | 2025-03-25 |
| cvxpy | None | A domain-specific language for modeling convex optimization problems in Python. | 2025-03-25 |
| cvxopt | None | Convex optimization package | 2025-03-25 |
| pyhmc | None | pyhmc: Hamiltonain Monte Carlo Sampling in Python | 2025-03-25 |
| munkres | None | munkres algorithm for the Assignment Problem | 2025-03-25 |
| numdifftools | None | Solves automatic numerical differentiation problems in one or more variables. | 2025-03-25 |
| omnia | None | Metapackage for the omnia.md biophysical simulation consortium. | 2025-03-25 |
| packmol | None | Packing Optimization for Molecular Dynamics Simulations | 2025-03-25 |
| pdbfixer | None | PDBFixer fixes problems in PDB files to prepare them for molecular simulation. | 2025-03-25 |
| pystallone | None | Python binding for Stallone java library | 2025-03-25 |
| pyemma | None | PyEMMA (EMMA = Emma's Markov Model Algorithms) is an open source Python/C package for analysis of extensive molecular dynamics simulations | 2025-03-25 |
| pybtex-docutils | None | A docutils backend for pybtex. | 2025-03-25 |
| sphinxcontrib-bibtex | None | A Sphinx extension for BibTeX style citations. | 2025-03-25 |
| pybtex | None | A BibTeX-compatible bibliography processor in Python | 2025-03-25 |
| oset | None | Ordered Set. | 2025-03-25 |
| latexcodec | None | A lexer and codec to work with LaTeX code in Python. | 2025-03-25 |
| yank | None | No Summary | 2025-03-25 |
| docopt | None | Pythonic argument parser, that will make you smile | 2025-03-25 |
| jpype1 | None | A Python to Java bridge. | 2025-03-25 |
| openmmtools | None | An OpenMM toolkit: test systems, integrators, and alchemical support | 2025-03-25 |
| pymbar | None | Python implementation of the multistate Bennett acceptance ratio (MBAR) method. | 2025-03-25 |
| ambermini | None | A stripped-down set of just antechamber, sqm, and tleap. See https://github.com/swails/ambermini | 2025-03-25 |
| msmbuilder | None | MSMBuilder: Statistical models for biomolecular dynamics | 2025-03-25 |
| fastcluster | None | Fast hierarchical clustering routines for R and Python. | 2025-03-25 |
