|
bhmm
|
None |
Bayesian hidden Markov models for analysis of single-molecule trajectory data
|
2025-03-25 |
|
algopy
|
None |
ALGOPY: Taylor Arithmetic Computation and Algorithmic Differentiation
|
2025-03-25 |
|
openmoltools
|
None |
No Summary
|
2025-03-25 |
|
pyvisfile
|
None |
Large-scale Visualization Data Storage
|
2025-03-25 |
|
pyublas
|
None |
Seamless Numpy-UBlas interoperability
|
2025-03-25 |
|
silo
|
None |
Silo is a library for reading and writing a wide variety of scientific data to binary, disk files.
|
2025-03-25 |
|
pytools
|
None |
A collection of tools for Python
|
2025-03-25 |
|
boost
|
None |
Boost provides free peer-reviewed portable C++ source libraries.
|
2025-03-25 |
|
appdirs
|
None |
A small Python module for determining appropriate platform-specific dirs, e.g. a "user data dir".
|
2025-03-25 |
|
pytram
|
None |
The TRAM package
|
2025-03-25 |
|
subprocess32
|
None |
Backport of the subprocess module from Python 3.2/3.3 for use on 2.x.
|
2025-03-25 |
|
ensembler
|
None |
Pipeline for automating omics-scale protein modeling and simulation setup.
|
2025-03-25 |
|
svgwrite
|
None |
A Python library to create SVG drawings.
|
2025-03-25 |
|
assaytools
|
None |
A library for the modeling and analysis of plate-based assays (development snapshot)
|
2025-03-25 |
|
openpathsampling-dev
|
None |
OpenPathSampling: A python package to do path sampling simulations
|
2025-03-25 |
|
schema
|
None |
Simple data validation library
|
2025-03-25 |
|
clusterutils
|
None |
Tools for use in compute cluster environments.
|
2025-03-25 |
|
sh
|
None |
Python subprocess interface
|
2025-03-25 |
|
python-coveralls
|
None |
Python interface to coveralls.io API
|
2025-03-25 |
|
parse_type
|
None |
Simplifies to build parse types based on the parse module
|
2025-03-25 |
|
parse
|
None |
parse() is the opposite of format()
|
2025-03-25 |
|
behave
|
None |
behave is behaviour-driven development, Python style
|
2025-03-25 |
|
pint
|
None |
Physical quantities module
|
2025-03-25 |
|
clapack
|
None |
No Summary
|
2025-03-25 |
|
repex
|
None |
OpenMM replica exchange utilities
|
2025-03-25 |
|
scs
|
None |
scs: splittling cone solver
|
2025-03-25 |
|
ecos
|
None |
A lightweight conic solver for second-order cone programming.
|
2025-03-25 |
|
cvxpy
|
None |
A domain-specific language for modeling convex optimization problems in Python.
|
2025-03-25 |
|
cvxopt
|
None |
Convex optimization package
|
2025-03-25 |
|
pyhmc
|
None |
pyhmc: Hamiltonain Monte Carlo Sampling in Python
|
2025-03-25 |
|
munkres
|
None |
munkres algorithm for the Assignment Problem
|
2025-03-25 |
|
numdifftools
|
None |
Solves automatic numerical differentiation problems in one or more variables.
|
2025-03-25 |
|
omnia
|
None |
Metapackage for the omnia.md biophysical simulation consortium.
|
2025-03-25 |
|
packmol
|
None |
Packing Optimization for Molecular Dynamics Simulations
|
2025-03-25 |
|
pdbfixer
|
None |
PDBFixer fixes problems in PDB files to prepare them for molecular simulation.
|
2025-03-25 |
|
pystallone
|
None |
Python binding for Stallone java library
|
2025-03-25 |
|
pyemma
|
None |
PyEMMA (EMMA = Emma's Markov Model Algorithms) is an open source Python/C package for analysis of extensive molecular dynamics simulations
|
2025-03-25 |
|
pybtex-docutils
|
None |
A docutils backend for pybtex.
|
2025-03-25 |
|
sphinxcontrib-bibtex
|
None |
A Sphinx extension for BibTeX style citations.
|
2025-03-25 |
|
pybtex
|
None |
A BibTeX-compatible bibliography processor in Python
|
2025-03-25 |
|
oset
|
None |
Ordered Set.
|
2025-03-25 |
|
latexcodec
|
None |
A lexer and codec to work with LaTeX code in Python.
|
2025-03-25 |
|
yank
|
None |
No Summary
|
2025-03-25 |
|
docopt
|
None |
Pythonic argument parser, that will make you smile
|
2025-03-25 |
|
jpype1
|
None |
A Python to Java bridge.
|
2025-03-25 |
|
openmmtools
|
None |
An OpenMM toolkit: test systems, integrators, and alchemical support
|
2025-03-25 |
|
pymbar
|
None |
Python implementation of the multistate Bennett acceptance ratio (MBAR) method.
|
2025-03-25 |
|
ambermini
|
None |
A stripped-down set of just antechamber, sqm, and tleap. See https://github.com/swails/ambermini
|
2025-03-25 |
|
msmbuilder
|
None |
MSMBuilder: Statistical models for biomolecular dynamics
|
2025-03-25 |
|
fastcluster
|
None |
Fast hierarchical clustering routines for R and Python.
|
2025-03-25 |
