openmm-example-plugin
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public |
An example plugin for openmm
|
2023-06-16 |
meld-plugin
|
public |
No Summary
|
2023-06-16 |
hdf5-1814
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None |
HDF5 pinned at 1.8.14, for use with Modeller
|
2023-06-16 |
autoprotocol
|
public |
Python library for generating Autoprotocol
|
2023-06-16 |
gpy
|
public |
No Summary
|
2023-06-16 |
shiftx2
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public |
SHIFTX2 predicts both the backbone and side chain 1H, 13C and 15N chemical shifts for proteins using their structural (PDB) coordinates as input.
|
2023-06-16 |
osprey
|
public |
|Build Status| |PyPi version| |Supported Python versions| |License|\n|Documentation Status|
|
2023-06-16 |
paramz
|
public |
The Parameterization Framework
|
2023-06-16 |
nglview
|
public |
IPython widget to interactively view molecular structures and trajectories.
|
2023-06-16 |
openmm-beta
|
public |
A high performance toolkit for molecular simulation.
|
2023-06-16 |
simpletraj
|
public |
Lightweight coordinate-only trajectory reader based on code from GROMACS, MDAnalysis, VMD.
|
2023-06-16 |
keras
|
public |
Theano-based Deep Learning library
|
2023-06-16 |
deepchem
|
public |
Deep-learning models for Drug Discovery and Quantum Chemistry
|
2023-06-16 |
theano
|
public |
Optimizing compiler for evaluating mathematical expressions on CPUs and GPUs.
|
2023-06-16 |
cpptraj
|
public |
Biomolecular simulation trajectory/data analysis.
|
2023-06-16 |
sphinxcontrib-autodoc_doxygen
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public |
Doxygen / Sphinx bridge, with autodoc and autosummary
|
2023-06-16 |
arpack
|
public |
ARPACK is a collection of Fortran77 subroutines designed to solve large scale eigenvalue problems.
|
2023-06-16 |
msinttypes
|
public |
No Summary
|
2023-06-16 |
cvxcanon
|
public |
A low-level library to perform the matrix building step in cvxpy, a convex optimization modeling software.
|
2023-06-16 |
alchemy
|
public |
Alchemical tools for OpenMM
|
2023-06-16 |
repex
|
None |
OpenMM replica exchange utilities
|
2023-06-16 |
msmtools
|
None |
Tools for estimating and analyzing Markov state models
|
2023-06-16 |
eigen3
|
None |
C++ template library for linear algebra
|
2023-06-16 |
modeller
|
None |
Comparative modeling by satisfaction of spatial restraints
|
2023-06-16 |
pint
|
None |
Physical quantities module
|
2023-06-16 |
thermotools
|
public |
Lowlevel implementation toolbox for the analyis of multi-ensemble calculations
|
2023-06-16 |
openbabel
|
public |
A chemical toolbox designed to speak the many languages of chemical data
|
2023-06-16 |
torsionfit-dev
|
public |
A toolkit for Bayesian torsion parameterization for molecular mechanics forcefields.
|
2023-06-16 |
ipynbtest
|
public |
No Summary
|
2023-06-16 |
ccache
|
public |
ccache is a compiler cache. It speeds up recompilation by caching previous compilations and detecting when the same compilation is being done again.
|
2023-06-16 |
autograd
|
public |
Efficiently computes derivatives of numpy code.
|
2023-06-16 |
progressbar
|
public |
No Summary
|
2023-06-16 |
hmmlearn
|
public |
Hidden Markov Models in Python with scikit-learn like API
|
2023-06-16 |
nose-timer
|
public |
A timer plugin for nosetests
|
2023-06-16 |
doxygen
|
public |
Doxygen is the de facto standard tool for generating documentation from annotated C++ sources
|
2023-06-16 |
m4
|
public |
GNU M4 is an implementation of the traditional Unix macro processor.
|
2023-06-16 |
boost
|
None |
Boost provides free peer-reviewed portable C++ source libraries.
|
2023-06-16 |
flex
|
public |
Flex is a fast lexical analyser generator.
|
2023-06-16 |
bison
|
public |
Bison, is a parser generator that is part of the GNU Project
|
2023-06-16 |
swig
|
public |
A tool that easily allows a developer to wrap C/C++ functions for use with scripting languages.
|
2023-06-16 |
bhmm
|
None |
Bayesian hidden Markov models for analysis of single-molecule trajectory data
|
2023-06-16 |
termcolor
|
public |
ANSII Color formatting for output in terminal.
|
2023-06-16 |
pyublas
|
None |
Seamless Numpy-UBlas interoperability
|
2023-06-16 |
appdirs
|
None |
A small Python module for determining appropriate platform-specific dirs, e.g. a "user data dir".
|
2023-06-16 |
pytools
|
None |
A collection of tools for Python
|
2023-06-16 |
cvxopt
|
None |
Convex optimization package
|
2023-06-16 |
behave
|
None |
behave is behaviour-driven development, Python style
|
2023-06-16 |
parse_type
|
None |
Simplifies to build parse types based on the parse module
|
2023-06-16 |
covar
|
public |
covar: shrinkage covariance estimation
|
2023-06-16 |
sh
|
None |
Python subprocess interface
|
2023-06-16 |