|
scs
|
None |
scs: splittling cone solver
|
2025-03-25 |
|
ecos
|
None |
A lightweight conic solver for second-order cone programming.
|
2025-03-25 |
|
cvxpy
|
None |
A domain-specific language for modeling convex optimization problems in Python.
|
2025-03-25 |
|
cvxopt
|
None |
Convex optimization package
|
2025-03-25 |
|
pyhmc
|
None |
pyhmc: Hamiltonain Monte Carlo Sampling in Python
|
2025-03-25 |
|
munkres
|
None |
munkres algorithm for the Assignment Problem
|
2025-03-25 |
|
numdifftools
|
None |
Solves automatic numerical differentiation problems in one or more variables.
|
2025-03-25 |
|
omnia
|
None |
Metapackage for the omnia.md biophysical simulation consortium.
|
2025-03-25 |
|
packmol
|
None |
Packing Optimization for Molecular Dynamics Simulations
|
2025-03-25 |
|
pdbfixer
|
None |
PDBFixer fixes problems in PDB files to prepare them for molecular simulation.
|
2025-03-25 |
|
pystallone
|
None |
Python binding for Stallone java library
|
2025-03-25 |
|
pyemma
|
None |
PyEMMA (EMMA = Emma's Markov Model Algorithms) is an open source Python/C package for analysis of extensive molecular dynamics simulations
|
2025-03-25 |
|
pybtex-docutils
|
None |
A docutils backend for pybtex.
|
2025-03-25 |
|
sphinxcontrib-bibtex
|
None |
A Sphinx extension for BibTeX style citations.
|
2025-03-25 |
|
pybtex
|
None |
A BibTeX-compatible bibliography processor in Python
|
2025-03-25 |
|
oset
|
None |
Ordered Set.
|
2025-03-25 |
|
latexcodec
|
None |
A lexer and codec to work with LaTeX code in Python.
|
2025-03-25 |
|
yank
|
None |
No Summary
|
2025-03-25 |
|
docopt
|
None |
Pythonic argument parser, that will make you smile
|
2025-03-25 |
|
jpype1
|
None |
A Python to Java bridge.
|
2025-03-25 |
|
openmmtools
|
None |
An OpenMM toolkit: test systems, integrators, and alchemical support
|
2025-03-25 |
|
pymbar
|
None |
Python implementation of the multistate Bennett acceptance ratio (MBAR) method.
|
2025-03-25 |
|
ambermini
|
None |
A stripped-down set of just antechamber, sqm, and tleap. See https://github.com/swails/ambermini
|
2025-03-25 |
|
msmbuilder
|
None |
MSMBuilder: Statistical models for biomolecular dynamics
|
2025-03-25 |
|
fastcluster
|
None |
Fast hierarchical clustering routines for R and Python.
|
2025-03-25 |
