|
miniasm
|
public |
Ultrafast de novo assembly for long noisy reads (though having no consensus step)
|
2025-03-25 |
|
mafft
|
public |
Multiple alignment program for amino acid or nucleotide sequences based on fast Fourier transform
|
2025-03-25 |
|
bwa
|
public |
The BWA read mapper.
|
2025-03-25 |
|
spoa
|
public |
SIMD partial order alignment tool/library
|
2025-03-25 |
|
pyspoa
|
public |
Python binding to spoa library.
|
2025-03-25 |
|
mash
|
public |
Fast sequence distance estimator that uses MinHash
|
2025-03-25 |
|
capnproto
|
public |
An insanely fast data interchange format and capability-based RPC system.
|
2025-03-25 |
|
trnascan-se
|
public |
tRNA detection in large-scale genomic sequences
|
2025-03-25 |
|
infernal
|
public |
Infernal is for searching DNA sequence databases for RNA structure and sequence similarities.
|
2025-03-25 |
|
diamond
|
public |
Accelerated BLAST compatible local sequence aligner
|
2025-03-25 |
|
blast
|
public |
BLAST+ is a new suite of BLAST tools that utilizes the NCBI C++ Toolkit.
|
2025-03-25 |
|
pychopper
|
public |
A tool to identify, orient and rescue full length cDNA reads from nanopore data.
|
2025-03-25 |
|
rasusa
|
public |
Randomly subsample sequencing reads to a specified coverage
|
2025-03-25 |
|
mbtools
|
public |
mbtools - toolkit for working with modification BAM files
|
2025-03-25 |
|
mappy
|
public |
Minimap2 Python binding
|
2025-03-25 |
|
pore-c-py
|
public |
Python scripts for working with Pore-C data
|
2025-03-25 |
|
entrez-direct
|
public |
Entrez Direct (EDirect) is an advanced method for accessing the NCBI's set of interconnected databases (publication, sequence, structure, gene, variation, expression, etc.) from a UNIX terminal window. Functions take search terms from command-line arguments. Individual operations are combined to build multi-step queries. Record retrieval and formatting normally complete the process.
|
2025-03-25 |
|
epi2melabs
|
public |
Helper library for miscellaneous EPI2ME Labs functionality
|
2025-03-25 |
|
ezcharts
|
public |
eCharts plotting API
|
2025-03-25 |
|
taxonkit
|
public |
A Cross-platform and Efficient NCBI Taxonomy Toolkit
|
2025-03-25 |
|
bracken
|
public |
Bracken (Bayesian Reestimation of Abundance with KrakEN) is a highly accurate statistical method that computes the abundance of species in DNA sequences from a metagenomics sample.
|
2025-03-25 |
|
bedtools
|
public |
A powerful toolset for genome arithmetic
|
2025-03-25 |
|
kraken2
|
public |
Kraken2 is a system for assigning taxonomic labels to short DNA sequences, usually obtained through metagenomic studies.
|
2025-03-25 |
|
aplanat
|
public |
Bokeh plotting API, with bio-focussed extras.
|
2025-03-25 |
|
sigfig
|
public |
Python library for rounding numbers (with expected results)
|
2025-03-25 |
