nanoporetech
by Nanopore (Organization)
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Packages
| Name | Latest Version | Summary | Updated | License |
|---|
| aplanat | 0.6.20 | Bokeh plotting API, with bio-focussed extras. | Mar 25, 2025 | Mozilla Public License 2.0 |
| aragorn | 1.2.41 | ARAGORN, tRNA (and tmRNA) detection | Mar 25, 2025 | GPLv3 |
| bcftools | 1.19 | BCFtools is a set of utilities that manipulate variant calls in the Variant Call Format (VCF) and its binary counterpart BCF. All commands work transparently with both VCFs and BCFs, both uncompressed and BGZF-compressed. Most commands accept VCF, bgzipped VCF and BCF with filetype detected automatically even when streaming from a pipe. Indexed VCF and BCF will work in all situations. Un-indexed VCF and BCF and streams will work in most, but not all situations. | Mar 25, 2025 | GPL |
| bedtools | 2.31.0 | A powerful toolset for genome arithmetic | Mar 25, 2025 | MIT |
| bioconductor-rhdf5filters | 1.12.1 | HDF5 Compression Filters | Mar 25, 2025 | BSD_2_clause + file LICENSE |
| bioconductor-rhdf5lib | 1.22.0 | hdf5 library as an R package | Mar 25, 2025 | Artistic-2.0 |
| bioconductor-zlibbioc | 1.46.0 | An R packaged zlib-1.2.5 | Mar 25, 2025 | Artistic-2.0 + file LICENSE |
| blast | 2.13.0 | BLAST+ is a new suite of BLAST tools that utilizes the NCBI C++ Toolkit. | Mar 25, 2025 | Public Domain |
| bracken | 2.8 | Bracken (Bayesian Reestimation of Abundance with KrakEN) is a highly accurate statistical method that computes the abundance of species in DNA sequences from a metagenomics sample. | Mar 25, 2025 | GPL-3.0 |
| bwa | 0.7.17 | The BWA read mapper. | Mar 25, 2025 | GPL3 |
| capnproto | 0.10.4 | An insanely fast data interchange format and capability-based RPC system. | Mar 25, 2025 | MIT |
| capnproto-nossl | 0.10.4 | An insanely fast data interchange format and capability-based RPC system. | Mar 25, 2025 | MIT |
| clustalw | 2.1 | ClustalW2 is a general purpose multiple sequence alignment program for DNA or proteins. | Mar 25, 2025 | GNU Lesser GPL |
| csvtk | 0.27.2 | A cross-platform, efficient, practical CSV/TSV toolkit | Mar 25, 2025 | MIT |
| diamond | 2.1.8 | Accelerated BLAST compatible local sequence aligner | Mar 25, 2025 | GPL-3.0 |
| entrez-direct | 16.2 | Entrez Direct (EDirect) is an advanced method for accessing the NCBI's set of interconnected databases (publication, sequence, structure, gene, variation, expression, etc.) from a UNIX terminal window. Functions take search terms from command-line arguments. Individual operations are combined to build multi-step queries. Record retrieval and formatting normally complete the process. | Mar 25, 2025 | PUBLIC DOMAIN |
| epi2melabs | 0.0.62 | Helper library for miscellaneous EPI2ME Labs functionality | Feb 9, 2026 | Mozilla Public License 2.0 |
| ezcharts | 0.16.1 | eCharts plotting API | Mar 27, 2026 | Mozilla Public License 2.0 |
| fastcat | 1.0.1 | Concatenate fast/a/q/gz and calculate basic statistics | Mar 4, 2026 | Mozilla Public License 2.0 |
| flye | 2.9.2 | Fast and accurate de novo assembler for single molecule sequencing reads | Mar 25, 2025 | BSD-3-Clause |
| gffcompare | 0.12.6 | GffCompare by Geo Pertea | Mar 25, 2025 | Artistic License 2.0 |
| hmmer | 3.4 | Biosequence analysis using profile hidden Markov models | Mar 25, 2025 | BSD |
| htslib | 1.21 | C library for high-throughput sequencing data formats. | Dec 15, 2025 | MIT |
| infernal | 1.1.4+neon | Infernal is for searching DNA sequence databases for RNA structure and sequence similarities. | Mar 25, 2025 | BSD-3-Clause |
| kraken2 | 2.1.2 | Kraken2 is a system for assigning taxonomic labels to short DNA sequences, usually obtained through metagenomic studies. | Mar 25, 2025 | GPLv3 |