nanoporetech
by Nanopore (Organization)
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Packages
| Name | Latest Version | Summary | Updated | License |
|---|
| medaka | 2.2.1 | Neural network sequence error correction. | Apr 8, 2026 | Oxford Nanopore Technologies PLC. Public License Version 1.0 |
| ont-spectre | 0.3.3 | Oxford Nanopore Technologies Plc. fork of Spectre CNV caller | May 2, 2025 | — |
| pod5 | 0.3.39 | POD5 is a file format for storing nanopore dna data in an easily accessible way. The format is able to be written in a streaming manner which allows a sequencing instrument to directly write the format. | Apr 1, 2026 | Mozilla Public License Version 2.0 |
| longphase | 1.7.3 | LongPhase is an ultra-fast program for simultaneously co-phasing SNPs, small indels, large SVs, and (5mC) modifications for Nanopore and PacBio platforms. | Mar 25, 2025 | GPL3 |
| percula | 0.0.6 | A CLI tool for preprocessing ONT and postprocessing SpaceRanger data | Dec 1, 2025 | Oxford Nanopore Technologies PLC. Public License Version 1.0 |
| pomoxis | 0.4.1 | Assembly, consensensus, and analysis tools by ONT research | Apr 9, 2026 | MPL-2.0 |
| np-artic | 1.3.0 | — | Mar 25, 2025 | MIT |
| fastcat | 1.0.1 | Concatenate fast/a/q/gz and calculate basic statistics | Mar 4, 2026 | Mozilla Public License 2.0 |
| minimap2 | 2.28 | A versatile pairwise aligner for genomic and spliced nucleotide sequences. | Mar 25, 2025 | MIT |
| htslib | 1.21 | C library for high-throughput sequencing data formats. | Dec 15, 2025 | MIT |
| pysam | 0.22.0 | Pysam is a Python module for reading and manipulating SAM/BAM/VCF/BCF files. It's a lightweight wrapper of the htslib C-API, the same one that powers samtools, bcftools, and tabix. | Mar 25, 2025 | MIT |
| parasail-python | 1.3.4 | Python bindings for the parasail C library containing implementations of pairwise sequence alignment algorithms. | Mar 25, 2025 | BSD-3-Clause |
| python-edlib | 1.3.9 | Lightweight, super fast C/C++ (& Python) library for sequence alignment using edit (Levenshtein) distance. | Mar 25, 2025 | MIT License |
| ezcharts | 0.16.1 | eCharts plotting API | Mar 27, 2026 | Mozilla Public License 2.0 |
| mappy | 2.24 | Minimap2 Python binding | Mar 25, 2025 | MIT |
| sigfig | 1.0.3 | Python library for rounding numbers (with expected results) | Mar 25, 2025 | GPL3 |
| samtools | 1.19.2 | Tools for dealing with SAM, BAM and CRAM files | Mar 25, 2025 | MIT |
| modkit | 0.6.1 | A toolkit for working with modified-base data stored within BAM files. | Jan 19, 2026 | Oxford Nanopore Technologies PLC. Public License Version 1.0 |
| hmmer | 3.4 | Biosequence analysis using profile hidden Markov models | Mar 25, 2025 | BSD |
| pychopper | 2.7.10 | A tool to identify, orient and rescue full length cDNA reads from nanopore data. | Mar 25, 2025 | Mozilla Public License 2.0 |
| pyspoa | 0.3.2 | Python binding to spoa library. | Dec 3, 2025 | MIT License |
| epi2melabs | 0.0.62 | Helper library for miscellaneous EPI2ME Labs functionality | Feb 9, 2026 | Mozilla Public License 2.0 |
| bcftools | 1.19 | BCFtools is a set of utilities that manipulate variant calls in the Variant Call Format (VCF) and its binary counterpart BCF. All commands work transparently with both VCFs and BCFs, both uncompressed and BGZF-compressed. Most commands accept VCF, bgzipped VCF and BCF with filetype detected automatically even when streaming from a pipe. Indexed VCF and BCF will work in all situations. Un-indexed VCF and BCF and streams will work in most, but not all situations. | Mar 25, 2025 | GPL |
| bedtools | 2.31.0 | A powerful toolset for genome arithmetic | Mar 25, 2025 | MIT |
| csvtk | 0.27.2 | A cross-platform, efficient, practical CSV/TSV toolkit | Mar 25, 2025 | MIT |