MOSAIC / packages

Package Name Access Summary Updated
visu_core public Generic methods and tools for data visualization in VTK, Matplotlib, plotly et al. 2022-07-20
treex public treex is a Python library for manipulating rooted trees. The trees can be ordered or not, with or without labels on their vertices. 2022-07-18
timagetk public Tissue Image Toolkit is a Python package dedicated to image processing of multicellular architectures such as plants or animals, and is intended for biologists, modelers and computer scientists. 2022-07-12
cellcomplex public No Summary 2022-07-12
timagetk_geometry public A Python library providing computational geometry tools for 3D images of multi-cellular tissues. 2022-06-01
ctrl public Cell Tracking and Robust Lineaging 2022-04-08
lpy_tools public A set of tools to improve L-Py functionalities. 2022-04-05
anifilters public Anisotropic filters which reinforce line-structures in 2D and planar structures in 3D 2022-03-14
lsm3d public Tools for segmenting 3D images of plant tissues at multiple scales using the level set method 2022-03-14
draco_stem public A Python library for the reconstruction of 3D meshes from segmented shoot apical meristem (SAM) tissue images. 2021-12-15
tissue_paredes public Polarity Analysis through Robust Extraction and Density Estimation of Signal at cell-wall level 2021-11-25
sam_spaghetti public No Summary 2021-11-24
bvpy public Package providing tools to solve BVP (Boundary Value Problem) and IBVP (Initial Boundary Value Problem). 2021-03-22
sam_atlas public No Summary 2021-03-19
tissue_analysis public An Python library providing image analysis tools to extract quantitative information from 3D segmented tissue images. 2021-02-05
tissue_nukem_3d public A Python library for the detection and quantitative data extraction from microscopy images of cell nuclei. 2021-01-14
geomtree public A package for treating trees augmented with 3D geometry. 2020-10-26
cellmesh public Meshing interface to gmsh for PropertyTopomesh and simple geometries 2020-07-10
femtk public Package providing tools to run FEM simulation on multi-cellular tissues 2020-07-06
simulation_core public Basic abstractions for the definition of simulation models on multi-cellular tissues 2020-06-22
tissue2d public Package to simulate growth, division and stiffening of 2D plant tissues 2020-04-08
cellfem public Package providing tools to run FEM simulation on multi-cellular tissues 2019-12-09
artificial_tissue public No Summary 2019-09-20

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