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visu_core
|
public |
Generic methods and tools for data visualization in VTK, Matplotlib, plotly et al.
|
2025-03-05 |
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timagetk
|
public |
TimageTK is a Python package dedicated to image processing of multicellular architectures, such as plants or animals. It is intended for biologists, modellers and computer scientists.
|
2025-03-04 |
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timagetk_geometry
|
public |
A Python library providing computational geometry tools for 3D images of multi-cellular tissues.
|
2025-02-21 |
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cellcomplex
|
public |
No Summary
|
2025-02-18 |
|
dxtr
|
public |
Discrete Exterior Calculus library in Python.
|
2025-02-11 |
|
bvpy
|
public |
Package providing tools to solve BVP (Boundary Value Problem) and IBVP (Initial Boundary Value Problem).
|
2025-01-27 |
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ctrl
|
public |
Cell Tracking and Robust Lineaging.
|
2024-10-17 |
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geoinfer3
|
public |
Geometric inference of surface tensions and cell pressures from a 3D tissue segmentation image
|
2024-09-12 |
|
maps_2d
|
public |
A python package to compute and analyze 2D maps from discrete 3D data.
|
2024-04-19 |
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treex
|
public |
treex is a Python library for manipulating rooted trees. The trees can be ordered or not, with or without labels on their vertices.
|
2024-04-18 |
|
lpy_tools
|
public |
A set of tools to improve L-Py functionalities.
|
2024-02-16 |
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sam_atlas
|
public |
No Summary
|
2024-02-06 |
|
developmental_registration
|
public |
A Python library providing temporal and spatial registration tools for 3D+t sequences data
|
2023-06-18 |
|
lsm3d
|
public |
Tools for segmenting 3D images of plant tissues at multiple scales using the level set method
|
2023-06-16 |
|
anifilters
|
public |
Anisotropic filters which reinforce line-structures in 2D and planar structures in 3D
|
2023-06-16 |
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simulation_core
|
public |
Basic abstractions for the definition of simulation models on multi-cellular tissues
|
2023-06-16 |
|
geomtree
|
public |
A package for treating trees augmented with 3D geometry.
|
2023-06-16 |
|
sam_spaghetti
|
public |
No Summary
|
2023-06-16 |
|
femtk
|
public |
Package providing tools to run FEM simulation on multi-cellular tissues
|
2023-06-16 |
|
cellfem
|
public |
Package providing tools to run FEM simulation on multi-cellular tissues
|
2023-06-16 |
|
cellmesh
|
public |
Meshing interface to gmsh for PropertyTopomesh and simple geometries
|
2023-06-16 |
|
tissue_paredes
|
public |
Polarity Analysis through Robust Extraction and Density Estimation of Signal at cell-wall level
|
2023-06-16 |
|
tissue2d
|
public |
Package to simulate growth, division and stiffening of 2D plant tissues
|
2023-06-16 |
|
artificial_tissue
|
public |
No Summary
|
2023-06-16 |
|
tissue_analysis
|
public |
An Python library providing image analysis tools to extract quantitative information from 3D segmented tissue images.
|
2023-06-16 |
|
draco_stem
|
public |
A Python library for the reconstruction of 3D meshes from segmented shoot apical meristem (SAM) tissue images.
|
2023-06-16 |
|
tissue_nukem_3d
|
public |
A Python library for the detection and quantitative data extraction from microscopy images of cell nuclei.
|
2023-06-16 |
