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r-rpanel
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public |
A set of functions to build simple GUI controls for R functions. These are built on the 'tcltk' package. Uses could include changing a parameter on a graph by animating it with a slider or a "doublebutton", up to more sophisticated control panels. Some functions for specific graphical tasks, referred to as 'cartoons', are provided.
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2023-06-16 |
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r-igraphdata
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public |
A small collection of various network data sets, to use with the 'igraph' package: the Enron email network, various food webs, interactions in the immunoglobulin protein, the karate club network, Koenigsberg's bridges, visuotactile brain areas of the macaque monkey, UK faculty friendship network, domestic US flights network, etc.
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2023-06-16 |
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r-ggallin
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public |
Extra geoms and scales for ggplot2.
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2023-06-16 |
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r-combat
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public |
Genome-wide association studies (GWAS) have been widely used for identifying common variants associated with complex diseases. Due to the small effect sizes of common variants, the power to detect individual risk variants is generally low. Complementary to SNP-level analysis, a variety of gene-based association tests have been proposed. However, the power of existing gene-based tests is often dependent on the underlying genetic models, and it is not known a priori which test is optimal. Here we proposed COMBined Association Test (COMBAT) to incorporate strengths from multiple existing gene-based tests, including VEGAS, GATES and simpleM. Compared to individual tests, COMBAT shows higher overall performance and robustness across a wide range of genetic models. The algorithm behind this method is described in Wang et al (2017) <doi:10.1534/genetics.117.300257>.
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2023-06-16 |
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r-liteq
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public |
Temporary and permanent message queues for R. Built on top of 'SQLite' databases. 'SQLite' provides locking, and makes it possible to detect crashed consumers. Crashed jobs can be automatically marked as "failed", or put in the queue again, potentially a limited number of times.
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2023-06-16 |
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r-bioinstaller
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public |
Can be used to integrate massive bioinformatics resources, such as tool/script and database. It provides the R functions and Shiny web application. Hundreds of bioinformatics tool/script and database have been included.
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2023-06-16 |
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r-futile.logger
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public |
Provides a simple yet powerful logging utility. Based loosely on log4j, futile.logger takes advantage of R idioms to make logging a convenient and easy to use replacement for cat and print statements.
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2023-06-16 |
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r-ngstk
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public |
Can be used to facilitate the analysis of NGS data, such as visualization, conversion of data format for WEB service input and other purpose.
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2023-06-16 |
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r-configr
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public |
Implements the JSON, INI, YAML and TOML parser for R setting and writing of configuration file. The functionality of this package is similar to that of package 'config'.
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2023-06-16 |
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r-cellranger
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public |
Helper functions to work with spreadsheets and the "A1:D10" style of cell range specification.
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2023-06-16 |
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r-rcolorbrewer
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public |
Provides color schemes for maps (and other graphics) designed by Cynthia Brewer as described at http://colorbrewer2.org
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2023-06-16 |
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r-icestaf
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public |
Functions to support the ICES Transparent Assessment Framework <https://taf.ices.dk> to organize data, methods, and results used in ICES assessments. ICES is an organization facilitating international collaboration in marine science.
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2023-06-16 |
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r-qwraps2
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public |
A collection of (wrapper) functions the creator found useful for quickly placing data summaries and formatted regression results into .Rnw or .Rmd files. Functions for generating commonly used graphics, such as receiver operating curves or Bland-Altman plots, are also provided by 'qwraps2'. 'qwraps2' is a updated version of an package 'qwraps'. The original version 'qwraps' was never submitted to CRAN but can be found at https://github.com/dewittpe/qwraps. The implementation and limited scope of the functions within 'qwraps2' (https://github.com/dewittpe/qwraps2) is fundamentally different from 'qwraps'.
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2023-06-16 |
