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bioconductor-annotationdbi
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public |
Implements a user-friendly interface for querying SQLite-based annotation data packages.
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2025-03-25 |
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r-bitops
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public |
Functions for bitwise operations on integer vectors.
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2025-03-25 |
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r-rcurl
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public |
A wrapper for 'libcurl' <https://curl.se/libcurl/> Provides functions to allow one to compose general HTTP requests and provides convenient functions to fetch URIs, get & post forms, etc. and process the results returned by the Web server. This provides a great deal of control over the HTTP/FTP/... connection and the form of the request while providing a higher-level interface than is available just using R socket connections. Additionally, the underlying implementation is robust and extensive, supporting FTP/FTPS/TFTP (uploads and downloads), SSL/HTTPS, telnet, dict, ldap, and also supports cookies, redirects, authentication, etc.
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2025-03-25 |
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r-cytoexplorer
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public |
An intuitive and interactive approach to analysing cytometry data in R. This package has been developed under ROpenSci gudelines to integrate conventional and cutting edge cytometry analysis tools under a unified open-source framework.
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2025-03-25 |
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r-gtools
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public |
Functions to assist in R programming, including: - assist in developing, updating, and maintaining R and R packages ('ask', 'checkRVersion', 'getDependencies', 'keywords', 'scat'), - calculate the logit and inverse logit transformations ('logit', 'inv.logit'), - test if a value is missing, empty or contains only NA and NULL values ('invalid'), - manipulate R's .Last function ('addLast'), - define macros ('defmacro'), - detect odd and even integers ('odd', 'even'), - convert strings containing non-ASCII characters (like single quotes) to plain ASCII ('ASCIIfy'), - perform a binary search ('binsearch'), - sort strings containing both numeric and character components ('mixedsort'), - create a factor variable from the quantiles of a continuous variable ('quantcut'), - enumerate permutations and combinations ('combinations', 'permutation'), - calculate and convert between fold-change and log-ratio ('foldchange', 'logratio2foldchange', 'foldchange2logratio'), - calculate probabilities and generate random numbers from Dirichlet distributions ('rdirichlet', 'ddirichlet'), - apply a function over adjacent subsets of a vector ('running'), - modify the TCP\_NODELAY ('de-Nagle') flag for socket objects, - efficient 'rbind' of data frames, even if the column names don't match ('smartbind'), - generate significance stars from p-values ('stars.pval'), - convert characters to/from ASCII codes ('asc', 'chr'), - convert character vector to ASCII representation ('ASCIIfy'), - apply title capitalization rules to a character vector ('capwords').
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2025-03-25 |
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bioconductor-opencyto
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public |
This package is designed to facilitate the automated gating methods in sequential way to mimic the manual gating strategy.
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2025-03-25 |
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r-embedsom
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public |
Provides a smooth mapping of multidimensional points into low-dimensional space defined by a self-organizing map. Designed to work with 'FlowSOM' and flow-cytometry use-cases. See Kratochvil et al. (2019) <doi:10.1101/496869>.
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2025-03-25 |
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bioconductor-ncdfflow
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public |
Provides HDF5 storage based methods and functions for manipulation of flow cytometry data.
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2025-03-25 |
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bioconductor-flowworkspace
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public |
This package is designed to facilitate comparison of automated gating methods against manual gating done in flowJo. This package allows you to import basic flowJo workspaces into BioConductor and replicate the gating from flowJo using the flowCore functionality. Gating hierarchies, groups of samples, compensation, and transformation are performed so that the output matches the flowJo analysis.
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2025-03-25 |
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bioconductor-flowcore
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public |
Provides S4 data structures and basic functions to deal with flow cytometry data.
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2025-03-25 |
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r-bh
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public |
Boost provides free peer-reviewed portable C++ source libraries. A large part of Boost is provided as C++ template code which is resolved entirely at compile-time without linking. This package aims to provide the most useful subset of Boost libraries for template use among CRAN packages. By placing these libraries in this package, we offer a more efficient distribution system for CRAN as replication of this code in the sources of other packages is avoided. As of release 1.75.0-0, the following Boost libraries are included: 'accumulators' 'algorithm' 'align' 'any' 'atomic' 'beast' 'bimap' 'bind' 'circular_buffer' 'compute' 'concept' 'config' 'container' 'date_time' 'detail' 'dynamic_bitset' 'exception' 'flyweight' 'foreach' 'functional' 'fusion' 'geometry' 'graph' 'heap' 'icl' 'integer' 'interprocess' 'intrusive' 'io' 'iostreams' 'iterator' 'math' 'move' 'mp11' 'mpl' 'multiprecision' 'numeric' 'pending' 'phoenix' 'polygon' 'preprocessor' 'propery_tree' 'random' 'range' 'scope_exit' 'smart_ptr' 'sort' 'spirit' 'tuple' 'type_traits' 'typeof' 'unordered' 'utility' 'uuid'.
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2025-03-25 |
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r-mass
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public |
Functions and datasets to support Venables and Ripley, "Modern Applied Statistics with S" (4th edition, 2002).
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2025-03-25 |
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r-superheat
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public |
A system for generating extendable and customizable heatmaps for exploring complex datasets, including big data and data with multiple data types.
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2025-03-25 |
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r-magrittr
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public |
Provides a mechanism for chaining commands with a new forward-pipe operator, %>%. This operator will forward a value, or the result of an expression, into the next function call/expression. There is flexible support for the type of right-hand side expressions. For more information, see package vignette. To quote Rene Magritte, "Ceci n'est pas un pipe."
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2025-03-25 |
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r-rodeo
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public |
This version of the package has only one function intended for external usage: Rodeo. It estimates how strongly each present cell type expresses different genes based on bulk expression data and cell type proportions of samples in the bulk data.
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2025-03-25 |
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r-flowassist
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public |
What the package does (one paragraph).
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2025-03-25 |
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r-dir.expiry
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public |
Implements an expiration system for access to versioned directories. Directories that have not been accessed by a registered function within a certain time frame are deleted. This aims to reduce disk usage by eliminating obsolete caches generated by old versions of packages.
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2025-03-25 |
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r-pavian
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public |
R package and Shiny app to visualize and analyze metagenomics classification results from Kraken, Centrifuge and MetaPhlAn.
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2025-03-25 |
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r-shinyfiletree
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public |
This creates a widget with a shiny file tree.
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2025-03-25 |
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r-sankeyd3
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public |
Creates 'D3' 'JavaScript' Sankey graphs from 'R'.
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2025-03-25 |
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r-scenic
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public |
SCENIC workflow
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2025-03-25 |
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r-scopeloomr
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public |
R package to build generic .loom files aligning with the default naming convention of the .loom format and to integrate other data types e.g.: regulons (SCENIC), clusters from Seurat, ... The package can also be used to extract data from .loom files.
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2025-03-25 |
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r-personograph
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public |
Visualizes treatment effects using person icons, similar to Cates (NNT) charts.
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2025-03-25 |
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r-goplot
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public |
Implementation of multilayered visualizations for enhanced graphical representation of functional analysis data. It combines and integrates omics data derived from expression and functional annotation enrichment analyses. Its plotting functions have been developed with an hierarchical structure in mind: starting from a general overview to identify the most enriched categories (modified bar plot, bubble plot) to a more detailed one displaying different types of relevant information for the molecules in a given set of categories (circle plot, chord plot, cluster plot, Venn diagram, heatmap).
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2025-03-25 |
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r-ggplotgui
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public |
Easily explore data by creating ggplots through a (shiny-)GUI. R-code to recreate graph provided.
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2025-03-25 |
