jrhawley
by James Hawley
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Packages
| Name | Latest Version | Summary | Updated | License |
|---|
| bctpy | 0.5.1 | — | Mar 25, 2025 | GPLv3 |
| canonicaljson | 1.1.4 | Canonical JSON | Mar 25, 2025 | Apache Software |
| clodius | 0.14.3 | Clodius is a tool for breaking up large data sets into smaller tiles that can subsequently be displayed using an appropriate viewer. | Mar 25, 2025 | MIT |
| daemonize | 2.5.0 | Library to enable your code run as a daemon process on Unix-like systems. | Mar 25, 2025 | MIT |
| dmrseq | 1.3.11 | — | Mar 25, 2025 | GPLv3 |
| dryhic | 0.1 | A set of tools to manipulate HiC data. | Mar 25, 2025 | GPLv3 |
| hic-straw | 0.0.6 | Extract data quickly from Juicebox hic files via straw | Mar 25, 2025 | MIT |
| hicup | 0.7.2 | HiCUP is a bioinformatics pipeline for processing Hi-C data. | Mar 25, 2025 | GPLv3 |
| higlass-python | 0.4.5 | Python bindings to and Jupyter Notebook+Lab integration for the HiGlass viewer | Mar 25, 2025 | MIT |
| interval | 1.0.0 | Python interval and interval set implementation. | Mar 25, 2025 | GPLv3 |
| msgpack | 1.0.0 | MessagePack (de)serializer. | Mar 25, 2025 | Apache Software |
| mustache-hic | 1.2.0 | Mustache is a Hi-C analysis tool | Mar 25, 2025 | MIT |
| negspy | 0.2.24 | Python NGS Repository | Mar 25, 2025 | — |
| neoloop | 0.2.3 | Predict neo-loops induced by structural variations | Mar 25, 2025 | https://raw.githubusercontent.com/XiaoTaoWang/NeoLoopFinder/master/LICENSE |
| pybbi | 0.2.2 | Python bindings to UCSC BigWig and BigBed library | Mar 25, 2025 | MIT |
| pycrlibm | 1.0.4.dev0 | Python bindings for CRlibm | Mar 25, 2025 | — |
| pyinterval | 1.2.1.dev0 | Interval arithmetic in Python | Mar 25, 2025 | — |
| pymacaroons | 0.13.0 | Macaroon library for Python | Mar 25, 2025 | MIT |
| python-frontmatter | 0.5.0 | Parse and manage posts with YAML (or other) frontmatter | Mar 25, 2025 | MIT |
| r-cream | 1.1.1 | Provides a new method for identification of clusters of genomic regions within chromosomes. Primarily, it is used for calling clusters of cis-regulatory elements (COREs). 'CREAM' uses genome-wide maps of genomic regions in the tissue or cell type of interest, such as those generated from chromatin-based assays including DNaseI, ATAC or ChIP-Seq. 'CREAM' considers proximity of the elements within chromosomes of a given sample to identify COREs in the following steps: 1) It identifies window size or the maximum allowed distance between the elements within each CORE, 2) It identifies number of elements which should be clustered as a CORE, 3) It calls COREs, 4) It filters the COREs with lowest order which does not pass the threshold considered in the approach. | Mar 25, 2025 | GPL (>= 3) |
| r-rcartocolor | 2.0.0 | Provides color schemes for maps and other graphics designed by 'CARTO' as described at <https://carto.com/carto-colors/>. It includes four types of palettes: aggregation, diverging, qualitative, and quantitative. | Mar 25, 2025 | MIT + file LICENSE |
| simple-httpfs | 0.2.1 | A simple FUSE-based http file system. Read http files as if they were on the local filesystem. | Mar 25, 2025 | MIT |
| slugid | 2.0.0 | URL-safe base64 UUID encoder for generating 22 character slugs | Mar 25, 2025 | MPL 2.0 |
| statutils | 0.1 | — | Mar 25, 2025 | MIT |
| tadlib | 0.4.2.post1 | A Library to Explore Chromatin Interaction Patterns for Topologically Associating Domains | Mar 25, 2025 | GNU General Public v3 or later (GPLv3+) |