| Package Name | Access | Summary | Updated |
|---|---|---|---|
| tadlib | public | A Library to Explore Chromatin Interaction Patterns for Topologically Associating Domains | 2025-03-25 |
| mustache-hic | public | Mustache is a Hi-C analysis tool | 2025-03-25 |
| neoloop | public | Predict neo-loops induced by structural variations | 2025-03-25 |
| hic-straw | public | Extract data quickly from Juicebox hic files via straw | 2025-03-25 |
| r-cream | public | Provides a new method for identification of clusters of genomic regions within chromosomes. Primarily, it is used for calling clusters of cis-regulatory elements (COREs). 'CREAM' uses genome-wide maps of genomic regions in the tissue or cell type of interest, such as those generated from chromatin-based assays including DNaseI, ATAC or ChIP-Seq. 'CREAM' considers proximity of the elements within chromosomes of a given sample to identify COREs in the following steps: 1) It identifies window size or the maximum allowed distance between the elements within each CORE, 2) It identifies number of elements which should be clustered as a CORE, 3) It calls COREs, 4) It filters the COREs with lowest order which does not pass the threshold considered in the approach. | 2025-03-25 |
| unpaddedbase64 | public | Encode and decode Base64 without `=` padding | 2025-03-25 |
| canonicaljson | public | Canonical JSON | 2025-03-25 |
| pymacaroons | public | Macaroon library for Python | 2025-03-25 |
| msgpack | public | MessagePack (de)serializer. | 2025-03-25 |
| daemonize | public | Library to enable your code run as a daemon process on Unix-like systems. | 2025-03-25 |
| r-rcartocolor | public | Provides color schemes for maps and other graphics designed by 'CARTO' as described at <https://carto.com/carto-colors/>. It includes four types of palettes: aggregation, diverging, qualitative, and quantitative. | 2025-03-25 |
| python-frontmatter | public | Parse and manage posts with YAML (or other) frontmatter | 2025-03-25 |
| higlass-python | public | Python bindings to and Jupyter Notebook+Lab integration for the HiGlass viewer | 2025-03-25 |
| simple-httpfs | public | A simple FUSE-based http file system. Read http files as if they were on the local filesystem. | 2025-03-25 |
| clodius | public | Clodius is a tool for breaking up large data sets into smaller tiles that can subsequently be displayed using an appropriate viewer. | 2025-03-25 |
| pybbi | public | Python bindings to UCSC BigWig and BigBed library | 2025-03-25 |
| negspy | public | Python NGS Repository | 2025-03-25 |
| slugid | public | URL-safe base64 UUID encoder for generating 22 character slugs | 2025-03-25 |
| pyinterval | public | Interval arithmetic in Python | 2025-03-25 |
| pycrlibm | public | Python bindings for CRlibm | 2025-03-25 |
| interval | public | Python interval and interval set implementation. | 2025-03-25 |
| hicup | public | HiCUP is a bioinformatics pipeline for processing Hi-C data. | 2025-03-25 |
| tadtree | public | Hierarchical TAD caller by the Raphael Lab | 2025-03-25 |
| dmrseq | public | No Summary | 2025-03-25 |
| statutils | public | No Summary | 2025-03-25 |
