| sortedcontainers | 1.5.3 | Python Sorted Container Types: SortedList, SortedDict, and SortedSet | Mar 25, 2025 | Apache 2.0 |
| intervaltree | 2.1.0 | Editable interval tree data structure for Python 2 and 3 | Mar 25, 2025 | Apache Software License |
| pysam | 0.8.4 | pysam | Mar 25, 2025 | MIT |
| pyfaidx | 0.4.8.1 | pyfaidx: efficient pythonic random access to fasta subsequences | Mar 25, 2025 | MIT License |
| imfusion | 0.2.0.dev0 | — | Mar 25, 2025 | — |
| pytest-datafiles | 0.2 | py.test plugin to create a 'tmpdir' containing predefined files/directories. | Mar 25, 2025 | MIT License |
| pytest-helpers-namespace | 2016.4.15 | PyTest Helpers Namespace | Mar 25, 2025 | Apache Software License |
| pytest-mock | 1.1 | Thin-wrapper around the mock package for easier use with py.test | Mar 25, 2025 | MIT License |
| pyim | 0.2.0.dev0 | — | Mar 25, 2025 | — |
| cov-core | 1.15.0 | plugin core for use by pytest-cov, nose-cov and nose2-cov | Mar 25, 2025 | MIT License |
| pytest-cov | 1.8.1 | py.test plugin for coverage reporting with support for both centralised and distributed testing, including subprocesses and multiprocessing | Mar 25, 2025 | MIT License |
| r-cimpl | 1.1 | — | Mar 25, 2025 | — |
| livereload | 2.3.2 | Python LiveReload is an awesome tool for web developers | Mar 25, 2025 | BSD License |
| im-fusion | 0.2.0.dev0 | IM-Fusion is a tool for identifying transposon insertion sites in insertional mutagenesis screens using single- and paired-end RNA-sequencing data. | Mar 25, 2025 | MIT |
| freebayes | 1.0.2.29 | Bayesian haplotype-based polymorphism discovery and genotyping | Mar 25, 2025 | MIT |
| sphinx-autobuild | 0.5.2 | Watch a Sphinx directory and rebuild the documentation when a change is detected. Also includes a livereload enabled web server. | Mar 25, 2025 | MIT License |
| tox | 2.3.1 | virtualenv-based automation of test activities | Mar 25, 2025 | MIT License |
| pqdict | 0.5 | A dictionary-like indexed priority queue | Mar 25, 2025 | MIT License |
| r-rubic | 1.0.2 | — | Mar 25, 2025 | — |
| ruffus | 2.6.3 | Light-weight Python Computational Pipeline Management | Mar 25, 2025 | MIT License |
| pluggy | 0.3.1 | plugin and hook calling mechanisms for python | Mar 25, 2025 | MIT License |
| repeatmasker | 4.0.7 | — | Mar 25, 2025 | — |
| frozendict | 1.2 | — | Mar 25, 2025 | — |
| rpy2 | 2.5.3 | Python interface to the R language (embedded R) | Mar 25, 2025 | GNU General Public License v2 or later (GPLv2+) |
| gmap | 2015.09.10 | — | Mar 25, 2025 | — |
