| Package Name | Access | Summary | Updated |
|---|---|---|---|
| rust-bio-tools | public | A growing collection of fast and secure command line utilities for dealing with NGS data implemented on top of Rust-Bio. | 2025-03-25 |
| bioconductor-rhdf5 | public | This package provides an interface between HDF5 and R. HDF5's main features are the ability to store and access very large and/or complex datasets and a wide variety of metadata on mass storage (disk) through a completely portable file format. The rhdf5 package is thus suited for the exchange of large and/or complex datasets between R and other software package, and for letting R applications work on datasets that are larger than the available RAM. | 2025-03-25 |
| bioconductor-rhdf5lib | public | Provides C and C++ hdf5 libraries. | 2025-03-25 |
| r-sleuth | public | Sleuth is an R library for analysis of RNA-Seq experiments for which transcript abundances have been quantified with kallisto. | 2025-03-25 |
| cgat-report | public | A report generator in python based on sphinx | 2025-03-25 |
| snakemake | public | Build systems like GNU Make are frequently used to create complicated workflows, e.g. in bioinformatics. This project aims to reduce the complexity of creating workflows by providing a clean and modern domain specific language (DSL) in python style, together with a fast and comfortable execution environment. | 2025-03-25 |
| bwa | public | The BWA read mapper. | 2025-03-25 |
| samtools | public | Tools for dealing with SAM, BAM and CRAM files | 2025-03-25 |
| bcftools | None | Tools for dealing with BCF and VCF files | 2025-03-25 |
| mageck-vispr | None | MAGeCK-VISPR is a comprehensive quality control, analysis and visualization pipeline for CRISPR/Cas9 screens based on MAGeCK, VISPR, Snakemake and FastQC. | 2025-03-25 |
| alpaca | None | ALPACA is a caller for genomic variants (single nucleotide and small indels) from next-generation sequencing data that uses a novel algebraic approach to incorporate sample based filtering into the calling. This allows to intuitively control the FDR for arbitrary filtering scenarios. | 2025-03-25 |
