| Package Name | Access | Summary | Updated |
|---|---|---|---|
| r-sigprofilermatrixgeneratorr | public | SigProfilerMatrixGenerator creates mutational matrices for all types of somatic mutations. It allows downsizing the generated mutations only to parts for the genome (e.g., exome or a custom BED file). The tool seamlessly integrates with other SigProfiler tools. | 2025-03-25 |
| sigprofilermatrixgenerator | public | SigProfiler matrix generator tool | 2025-03-25 |
| sigprofilerplotting | public | SigProfiler plotting tool | 2025-03-25 |
| scan2 | public | SNV genotyper for PTA-amplified single cells | 2025-03-25 |
| r-scan2 | public | R objects for interactive single cell SNV and indel genotyping | 2025-03-25 |
| r-scansnv | public | Single cell somatic SNV genotyper. | 2025-03-25 |
| scansnv | public | SNV genotyper for MDA-amplified single cells | 2025-03-25 |
| r-fastghquad | public | Fast, numerically-stable Gauss-Hermite quadrature rules and utility functions for adaptive GH quadrature. See Liu, Q. and Pierce, D. A. (1994) <doi:10.2307/2337136> for a reference on these methods. | 2025-03-25 |
| natefoo-slurm-drmaa | public | No Summary | 2025-03-25 |
