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q2-gcn-norm

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QIIME2 plugin for normalizing sequences by 16S rRNA gene copy number based on rrnDB database

Installation

To install this package, run one of the following:

Conda
$conda install jiungwenchen::q2-gcn-norm

Usage Tracking

2021.11
2021.04
2019.11.1
2019.11
4 / 8 versions selected
Downloads (Last 6 months): 0

Description

This QIIME 2 plugin normalizes sequences by 16S rRNA gene copy number (GCN) based on rrnDB database (version 5.7). The plugin matches the taxa of sequences with the rrnDB-5.7pantaxastats_NCBI.tsv file, starting from the lowest taxonomic rank. If a match is found, the mean of GCN for the taxon is assigned; if not, the plugin will try to match a higher rank until the highest rank is met. All the unassigned sequences are assumed to have one GCN.

About

Summary

QIIME2 plugin for normalizing sequences by 16S rRNA gene copy number based on rrnDB database

Last Updated

Nov 22, 2021 at 06:14

License

BSD-3-Clause

Supported Platforms

noarch