imperial-college-research-computing
by imperial-college-research-computing (Organization)
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Packages
| Name | Latest Version | Summary | Updated | License |
|---|
| abyss | 1.5.2 | — | Mar 25, 2025 | — |
| ants | 2.3.1 | Advanced Normalization Tools - ANTs extracts information from complex datasets that include imaging (Word Cloud). Paired with ANTsR (answer), ANTs is useful for managing, interpreting and visualizing multidimensional data. ANTs is popularly considered a state-of-the-art medical image registration and segmentation toolkit. | Mar 25, 2025 | BSD License |
| atomeyelib | 20170425 | — | Mar 25, 2025 | — |
| biogeme | 2.6a | Biogeme is an open source freeware designed for the maximum likelihood estimation of parametric models in general, with a special emphasis on discrete choice models. Two versions of the software are avaible. | Mar 25, 2025 | NONE |
| boost-cpp | 1.64.0 | Free peer-reviewed portable C++ source libraries. | Mar 25, 2025 | Boost-1.0 |
| bracer | 0.1 | BraCeR - reconstruction of B cell receptor sequences from single-cell RNA-seq data. | Mar 25, 2025 | Apache License 2.0 |
| canu-pbs | 1.7 | This version of canu has been optmized for compatibility with PBS Pro Workload Manager and Job Scheduler used at Imperial College London. | Mar 25, 2025 | GPLv2 and others |
| cellprofiler | 2.2.0 | An open-source application for measuring phenotypes | Mar 25, 2025 | The BSD 3-Clause License |
| changeo | 0.3.12 | Change-O is a collection of tools for processing the output of V(D)J alignment tools, assigning clonal clusters to immunoglobulin (Ig) sequences, and reconstructing germline sequences. | Mar 25, 2025 | Creative Commons Attribution-ShareAlike 4.0 International (CC BY-SA 4.0) |
| crest | 1.0 | CREST (Clipping Reveals Structure) is a new algorithm for detecting genomic structural variations at base-pair resolution using next-generation sequencing data | Mar 25, 2025 | GPL-3 |
| danpos | 2.2.2 | — | Mar 25, 2025 | — |
| dcm2bids | 1.1.8 | Reorganising NIfTI files from dcm2niix into the Brain Imaging Data Structure | Mar 25, 2025 | GPL3 |
| deepsea | 0.94 | DeepSEA is a deep learning-based algorithmic framework for predicting the chromatin effects of sequence alterations with single nucleotide sensitivity. DeepSEA can accurately predict the epigenetic state of a sequence, including transcription factors binding, DNase I sensitivities and histone marks in multiple cell types, and further utilize this capability to predict the chromatin effects of sequence variants and prioritize regulatory variants. | Mar 25, 2025 | CC-BY |
| desolve | 1.20 | — | Mar 25, 2025 | GPL2,GPL3 |
| flatspin | 1.0 | Artificial Spin Ice simulator | Mar 25, 2025 | GNU General Public v3 (GPLv3) |
| fltk | 1.3.4 | The Fast Light Tool Kit ("FLTK", pronounced "fulltick") is a cross-platform C++ GUI toolkit | Mar 25, 2025 | LGPL-2.0 |
| glib | 2.53.6 | Provides core application building blocks for libraries and applications written in C. | Mar 25, 2025 | LGPL-2.1 |
| gmcloser | 1.6 | — | Mar 25, 2025 | — |
| gzstream | 1.5 | — | Mar 25, 2025 | LGPL |
| hess | 0.5 | — | Mar 25, 2025 | — |
| isaac4 | 18.11.09 | Illumina short-read alignment program | Mar 25, 2025 | GPL-3 |
| lasagne | 0.1 | A lightweight library to build and train neural networks in Theano | Mar 25, 2025 | MIT |
| ncurses-dsos | 0.1 | — | Mar 25, 2025 | GPL2,GPL3 |
| ohana | 0.1 | Ohana is a suite of software for analyzing population structure and admixture history using unsupervised learning methods. We construct statistical models to infer individual clustering from which we identify outliers for selection analyses. This project is directed by Dr. Rasmus Nielsen at University of California Berkeley. Jade Cheng is funded by the Bioinformatics, Computer Science Department at Aarhus University and the Natural History Museum of Denmark at Copenhagen University. | Mar 25, 2025 | — |
| parcels | 0.9 | — | Mar 25, 2025 | MIT |