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Gradual INtegrated GEne Reconstruction (GINGER)

Installers

  • linux-64 v1.0.1

conda install

To install this package run one of the following:
conda install i10labtitech::ginger

Description

GINGER is a tool that is implemented an integrated method for gene structure prediction in higher eukaryotes. RNA-Seq-based methods, ab initio-based methods, homology-based methods are performed, and then gene structures are reconstructed via dynamic programming with appropriately weighted and scored exon/intron/intergenic regions. Different prediction processes and filtering criteria are applied to multi-exon and single-exon genes. This pipeline is implemented using Nextflow.


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