| Package Name | Access | Summary | Updated |
|---|---|---|---|
| ankh | public | Optimized Protein Language Model | 2025-12-20 |
| r-candihap | public | CandiHap is a user-friendly local software, that can fast preselect candidate causal SNPs from Sanger or next-generation sequencing data, and report results in table and exquisite vector-graphs within a minute. | 2025-12-17 |
| chrombpnet | public | Bias factorized, base-resolution deep learning models of chromatin accessibility (chromBPNet). | 2025-12-09 |
| modisco | public | Transcription Factor MOtif Discovery from Importance SCOres. | 2025-12-08 |
| model-angelo | public | Automatic atomic model building program for cryo-EM maps. | 2025-12-06 |
| modisco-lite | public | Transcription Factor MOtif Discovery from Importance SCOres - lite. | 2025-12-03 |
| memelite | public | Biological sequence analysis for the modern age. | 2025-12-03 |
| dynamight | public | Tool for reconstruction and analysis of continuous heterogeneity of a cryo-EM dataset. | 2025-12-02 |
| starfile | public | STAR file I/O in Python | 2025-12-02 |
| relion-blush | public | Blush regularization in RELION-5. | 2025-12-02 |
| promptlib | public | Prompt library | 2025-11-21 |
| relion-classranker | public | RELION automatic 2D class selection. | 2025-11-17 |
| django-migration-linter | public | Detect backward incompatible migrations for your django project. | 2025-10-07 |
| pyboxen | public | Beautiful, customizable boxes in your terminal using Python. | 2025-10-07 |
| metacompass | public | MetaCompass: Reference-guided Assembly of Metagenomes. | 2025-09-11 |
| r-epianeufinder | public | R package to detect breakpoints and assign somies to scATAC-seq data. | 2025-09-04 |
| r-atacnv | public | This is the R package implementation for AtaCNA, a CNA detection algorithm for scATAC-seq datasets. | 2025-09-04 |
| r-simatac | public | simATAC is a framework provided as an R package that generates a single-cell Assay for Transposase-Accessible Chromatin sequencing (scATAC-seq) count matrix, highly resembling real scATAC-seq datasets in library size, sparsity, and averaged chromatin accessibility signals. | 2025-09-03 |
| toga | public | TOGA is a new method that integrates gene annotation, inferring orthologs and classifying genes as intact or lost. | 2025-08-30 |
| compass-cplex | public | In-Silico Modeling of Metabolic Heterogeneity using Single-Cell Transcriptomes. | 2025-08-27 |
| gsl | public | GNU Scientific Library | 2025-08-04 |
| bioemu | public | Inference code for scalable emulation of protein equilibrium ensembles with generative deep learning. | 2025-07-29 |
| abinit | public | ABINIT is an atomic-scale simulation software suite. | 2025-07-29 |
| pytorch | public | Tensors and Dynamic neural networks in Python with strong GPU acceleration | 2025-07-25 |
| openmpi | public | Message Passing Interface | 2025-07-25 |
