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octave-signal
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public |
Signal processing tools, including filtering, windowing and display functions.
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2023-06-16 |
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octave-statistics
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public |
Additional statistics functions for Octave.
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2023-06-16 |
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shortbred
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public |
ShortBRED is a system for profiling protein families of interest at very high specificity in shotgun meta’omic sequencing data.
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2023-06-16 |
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octave-control
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public |
Computer-Aided Control System Design (CACSD) Tools for GNU Octave, based on the proven SLICOT Library.
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2023-06-16 |
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octave-image
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public |
The Octave-forge Image package provides functions for processing images.
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2023-06-16 |
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octave-io
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public |
Input/Output in external formats.
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2023-06-16 |
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octave-struct
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public |
Additional structure manipulation functions.
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2023-06-16 |
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r-mashr
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public |
An R package for multivariate adaptive shrinkage.
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2023-06-16 |
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r-logisticpca
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public |
Dimensionality reduction techniques for binary data including logistic PCA.
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2023-06-16 |
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bison
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public |
General purpose parser generator converting annotated context-free grammar to a deterministic LR/GLR parser.
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2023-06-16 |
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vftools
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public |
VFTools is a a loose collection of additional tools and scripts which can be useful when using VirtualFlow.
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2023-06-16 |
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vgas
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public |
VGAS (viral genome annotation system) is a system combing ab initio method and similarity-based method, which can perform the functions of virus gene finding and function annotating merely depending on the gene sequence itself.
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2023-06-16 |
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vigor4
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public |
VIGOR4 (Viral Genome ORF Reader) is a Java application to predict protein sequences encoded in viral genomes.
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2023-06-16 |
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cutruntools
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public |
This package contains the pipeline for conducting a CUT&RUN analysis. The pipeline comprises of read trimming, alignment steps, motif finding steps, and finally the motif footprinting step.
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2023-06-16 |
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octave
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public |
GNU Octave is a high-level language, primarily intended for numerical computations
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2023-06-16 |
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r-centipede
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public |
CENTIPEDE learns a DNaseI footprint of a transcription factor and predicts its binding sites.
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2023-06-16 |
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atactk-cutruntools
|
public |
A patched version of the atactk package for use with cutruntools.
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2023-06-16 |
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suitesparse
|
public |
A suite of sparse matrix algorithms
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2023-06-16 |
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metis
|
public |
METIS - Serial Graph Partitioning and Fill-reducing Matrix Ordering
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2023-06-16 |
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inla
|
public |
Full Bayesian Analysis of Latent Gaussian Models using Integrated Nested Laplace Approximations
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2023-06-16 |
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r-mathlib
|
public |
GNU R standalone mathematics library.
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2023-06-16 |
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gmrflib
|
public |
Full Bayesian Analysis of Latent Gaussian Models using Integrated Nested Laplace Approximations
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2023-06-16 |
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taucs
|
public |
A library of sparse linear solvers.
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2023-06-16 |
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torchvision
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public |
image and video datasets and models for torch deep learning
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2023-06-16 |
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pillow
|
public |
Python Imaging Library (Fork)
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2023-06-16 |
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pillow-simd
|
public |
Python Imaging Library (Fork)
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2023-06-16 |
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pymlst
|
public |
python Mlst Local Search Tool
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2023-06-16 |
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libimagequant
|
public |
Palette quantization library that powers pngquant and other PNG optimizers.
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2023-06-16 |
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r-inla
|
public |
Full Bayesian Analysis of Latent Gaussian Models using Integrated Nested Laplace Approximations
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2023-06-16 |
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r-hkprocess
|
public |
Methods to make inference about the Hurst-Kolmogorov and the AR(1) process.
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2023-06-16 |
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pytorch
|
public |
Tensors and Dynamic neural networks in Python with strong GPU acceleration
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2023-06-16 |
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xorriso
|
public |
ISO 9660 Rock Ridge Filesystem Manipulator
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2023-06-16 |
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retroseq
|
public |
RetroSeq is a bioinformatics tool that searches for mobile element insertions from aligned reads in a BAM file and a library of reference transposable elements.
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2023-06-16 |
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adfr-suite
|
public |
AutoDockFR (or ADFR in short) is a protein-ligand docking program developed in the Sanner laboratory at Scripps Research under the AutoDock umbrella
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2023-06-16 |
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macs-simulator
|
public |
MaCS is a simulator of the coalescent process that simulates geneologies spatially across chromosomes as a Markovian process.
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2023-06-16 |
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macs
|
public |
Model Based Analysis for ChIP-Seq data.
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2023-06-16 |
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genodiver
|
public |
Geno-Diver is a complex animal genetic simulation tool that is able to simulate quantitative and/or fitness characters.
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2023-06-16 |
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povray
|
public |
The Persistence of Vision Raytracer.
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2023-06-16 |
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effector-p
|
public |
EffectorP is a machine learning method for fungal effector prediction in secretomes.
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2023-06-16 |
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weka
|
public |
The workbench for machine learning.
|
2023-06-16 |
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delly-omp
|
public |
Structural variant discovery by integrated paired-end and split-read analysis.
|
2023-06-16 |
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cenote-taker2
|
public |
Cenote-Taker2 is a pipeline for divergent virus discovery and annotation.
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2023-06-16 |
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phanotate
|
public |
PHANOTATE is a tool to annotate phage genomes.
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2023-06-16 |
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fastpath
|
public |
Fastpath is a fast and lightweight tool for finding the shortest path in a weighted graph.
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2023-06-16 |
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igs-portal-client
|
public |
Python-based client for downloading data made available through portals powered by the GDC-based portal system.
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2023-06-16 |
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scipio
|
public |
Scipio locates the regions coding for a query protein sequence in a DNA target sequence.
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2023-06-16 |
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basespace-cli
|
public |
Toolkit to perform regulatory genomics data analysis
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2023-06-16 |
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staphb-toolkit
|
public |
The StaPH-B ToolKit is a Python library of commonly used bioinformatics tools that help to inform public health action. The StaPH-B ToolKit utilizes the StaPH-B Docker Images to enable easy access of open-source software without the need of local installation and/or dependency maintenance.
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2023-06-16 |
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oma
|
public |
OMA standalone is a standalone package that can infer orthologs using the OMA algorithm on custom genomes.
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2023-06-16 |
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gethogs
|
public |
GETHOGs is a library to infer hierarchical orthologous groups from pairwise evolutionary relationship and its related reference species tree.
|
2023-06-16 |
