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sniffles2-plot
|
public |
Visualizer tool for plot generating
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2024-10-25 |
|
hcc-jupyter-kernels
|
public |
Jupyter kernelspec files for HCC resources
|
2024-10-18 |
|
compass-cplex
|
public |
In-Silico Modeling of Metabolic Heterogeneity using Single-Cell Transcriptomes.
|
2024-09-13 |
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cnvcaller
|
public |
CNVcaller is designed to detect copy number variation using sequencing data from populations.
|
2024-08-22 |
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gsufsort
|
public |
Building suffix arrays, LCP-arrays and BWTs for string collections.
|
2024-08-05 |
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biser
|
public |
Fast Characterization of Segmental Duplication Structure in Multiple Genome Assemblies.
|
2024-07-31 |
|
seq
|
public |
Seq — the bioinformatics module for Codon.
|
2024-07-30 |
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codon
|
public |
A high-performance, zero-overhead, extensible Python compiler using LLVM.
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2024-07-30 |
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duo-client
|
public |
Reference client for Duo Security APIs
|
2024-07-29 |
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freesasa-cli
|
public |
Calculate solvent accessible surface areas of proteins
|
2024-07-25 |
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juicer
|
public |
A One-Click System for Analyzing Loop-Resolution Hi-C Experiments.
|
2024-07-24 |
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autodock-gpu
|
public |
AutoDock for GPUs using OpenCL.
|
2024-07-10 |
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cudatoolkit
|
public |
NVIDIA CUDA Toolkit
|
2024-07-10 |
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afni
|
public |
AFNI is a suite of programs for looking at and analyzing 3D brain images.
|
2024-07-03 |
|
mro
|
public |
Microsoft R Open is the enhanced distribution of R from Microsoft Corporation.
|
2024-07-03 |
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tensorflow-cpucompat
|
public |
Computation using data flow graphs for scalable machine learning.
|
2024-07-03 |
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dorado-gpu
|
public |
Dorado is a high-performance, easy-to-use, open source basecaller for Oxford Nanopore reads.
|
2024-06-26 |
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dorado
|
public |
Dorado is a high-performance, easy-to-use, open source basecaller for Oxford Nanopore reads.
|
2024-06-26 |
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mrtrix3tissue
|
public |
MRtrix3Tissue adds capabilities for 3-Tissue CSD modelling and analysis to a complete version of MRtrix3.
|
2024-06-21 |
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modflow-2005
|
public |
Three-dimensional finite-difference ground-water flow model.
|
2024-06-14 |
|
poplddecay
|
public |
Fast and effective tool for linkage disequilibrium decay analysis.
|
2024-05-17 |
|
xcrysden
|
public |
XCrySDen is a crystalline and molecular structure visualisation program aiming at display of isosurfaces and contours, which can be superimposed on crystalline structures and interactively rotated and manipulated.
|
2024-05-14 |
|
tensorboard-plugin-profile
|
public |
A profiling and performance analysis tool for TensorFlow.
|
2024-05-10 |
|
gviz-api
|
public |
Python API for Google Visualization
|
2024-05-10 |
|
togl
|
public |
A Tcl/Tk widget for OpenGL rendering.
|
2024-05-07 |
|
boa-bacfinder
|
public |
Find bacteriocins in bacterial genomes
|
2024-04-28 |
|
deepemhancer
|
public |
Deep learning for cryo-EM maps post-processing.
|
2024-04-25 |
|
tpg
|
public |
Toy Parser Generator is a lexical and syntactic parser generator for Python.
|
2024-04-24 |
|
pysages
|
public |
Python Suite for Advanced General Ensemble Simulations.
|
2024-04-23 |
|
dssp
|
public |
Application to assign secondary structure to proteins.
|
2024-04-02 |
|
libmcfp
|
public |
A header only library that can collect configuration options from command line arguments and configuration files.
|
2024-04-01 |
|
psipred
|
public |
The PSIPRED Workbench provides a range of protein structure prediction methods.
|
2024-03-27 |
|
revbayes
|
public |
Bayesian Phylogenetic Inference Using Graphical Models and an Interactive Model-Specification Language.
|
2024-02-29 |
|
consurf
|
public |
Stand Alone version of ConSurf
|
2024-01-18 |
|
jmodeltest
|
public |
jModelTest is a tool to carry out statistical selection of best-fit models of nucleotide substitution.
|
2024-01-04 |
|
gurobi-matlab
|
public |
MATLAB files for Gurobi optimizer.
|
2023-12-21 |
|
prottest3
|
public |
ProtTest is a bioinformatic tool for the selection of best-fit models of aminoacid replacement for the data at hand.
|
2023-12-20 |
|
rate4site
|
public |
Rate4Site is a program for detecting conserved amino-acid sites by computing the relative evolutionary rate for each site in the multiple sequence alignment (MSA)..
|
2023-12-20 |
|
subversion
|
public |
Enterprise-class centralized version control for the masses
|
2023-08-08 |
|
ashs
|
public |
ASHS is software for automatic segmentation of the medial temporal lobe (MTL) substructures from brain MRI scans.
|
2023-08-01 |
|
shtns
|
public |
SHTns is a high performance library for Spherical Harmonic Transform written in C, aimed at numerical simulation (fluid flows, mhd, ...) in spherical geometries.
|
2023-07-12 |
|
r-paran
|
public |
An implementation of Horn's technique for numerically and graphically evaluating the components or factors retained in a principle components analysis (PCA) or common factor analysis (FA). Horn's method contrasts eigenvalues produced through a PCA or FA on a number of random data sets of uncorrelated variables with the same number of variables and observations as the experimental or observational data set to produce eigenvalues for components or factors that are adjusted for the sample error-induced inflation. Components with adjusted eigenvalues greater than one are retained. paran may also be used to conduct parallel analysis following Glorfeld's (1995) suggestions to reduce the likelihood of over-retention.
|
2023-07-06 |
|
r-phia
|
public |
Analysis of terms in linear, generalized and mixed linear models, on the basis of multiple comparisons of factor contrasts. Specially suited for the analysis of interaction terms.
|
2023-07-06 |
|
cp2k
|
public |
Quantum chemistry and solid state physics software package
|
2023-06-30 |
|
nquire
|
public |
A statistical framework for ploidy estimation using NGS short-read data.
|
2023-06-22 |
|
git
|
public |
distributed version control system
|
2023-06-18 |
|
popoolation2
|
public |
PoPoolation2 allows to compare allele frequencies for SNPs between two or more populations and to identify significant differences.
|
2023-06-18 |
|
t-coffee
|
public |
A collection of tools for Multiple Alignments of DNA, RNA, Protein Sequence
|
2023-06-18 |
|
nomad
|
public |
NOMAD is an unsupervised and reference-free unifying framework to discover regulated sequence variation through statistical analysis of k-mer composition in both DNA and RNA sequence.
|
2023-06-18 |
|
blobtoolkit
|
public |
Interactive quality assessment of genome assemblies.
|
2023-06-18 |
