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sandstone-jupyterhub-login
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public |
This is modified JupyterHub multi-user spawner for Sandstone IDE on HCC resources.
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2025-03-25 |
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jupyter-duoauthenticator
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public |
Simple Duo Authenticator Plugin for JupyterHub.
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2025-03-25 |
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sandstone-ide
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public |
This is modified Sandstone IDE for HCC resources.
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2025-03-25 |
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wrapspawner
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public |
Mechanism for runtime configuration of spawners for JupyterHub.
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2025-03-25 |
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batchspawner
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public |
This is modified batchspawner for Jupyterhub on HCC resources.
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2025-03-25 |
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hcc-du
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public |
HCC utility to query quota and file purge status.
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2025-03-25 |
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duo_python
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public |
Duo two-factor authentication for Python web applications.
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2025-03-25 |
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simplepam
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public |
An interface to the Pluggable Authentication Modules (PAM) library on linux, written in pure python (using ctypes).
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2025-03-25 |
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bitmath
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public |
Pythonic module for representing and manipulating file sizes with different prefix notations (file size unit conversion).
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2025-03-25 |
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r-phia
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public |
Analysis of terms in linear, generalized and mixed linear models, on the basis of multiple comparisons of factor contrasts. Specially suited for the analysis of interaction terms.
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2025-03-25 |
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r-paran
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public |
An implementation of Horn's technique for numerically and graphically evaluating the components or factors retained in a principle components analysis (PCA) or common factor analysis (FA). Horn's method contrasts eigenvalues produced through a PCA or FA on a number of random data sets of uncorrelated variables with the same number of variables and observations as the experimental or observational data set to produce eigenvalues for components or factors that are adjusted for the sample error-induced inflation. Components with adjusted eigenvalues greater than one are retained. paran may also be used to conduct parallel analysis following Glorfeld's (1995) suggestions to reduce the likelihood of over-retention.
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2025-03-25 |
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lyve-set
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public |
LYVE version of the Snp Extraction Tool (SET), a method of using hqSNPs to create a phylogeny.
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2025-03-25 |
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lyve-set-cg-pipeline
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public |
Genome assembly/prediction/annotation pipeline for the Linux command line
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2025-03-25 |
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mni-n3
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public |
A non-parametric method for correction of intensity non-uniformity in MRI data.
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2025-03-25 |
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perl-getopt-tabular
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public |
table-driven argument parsing for Perl 5
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2025-03-25 |
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perl-mni
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public |
The MNI Perl Library is a collection of Perl modules originally designed to help writing glorified shell scripts -- that is, programs that (mainly) run other programs.
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2025-03-25 |
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perl-schedule-sgelk
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public |
Perl module for scheduling tasks, with only using qsub/qstat/qdel.
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2025-03-25 |
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perl-statistics-linefit
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public |
Least squares line fit, weighted or unweighted
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2025-03-25 |
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perl-graph-centrality-pagerank
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public |
Computes pagerank of all nodes in a graph.
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2025-03-25 |
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perl-array-intspan
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public |
Handles arrays of scalars or objects using integer ranges
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2025-03-25 |
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ebtks
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public |
EBTKS - stands for Everything But The Kitchen Sink - is Alex Zijdenbos library of numerical types and algorithms, and is needed by classify and inormalize.
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2025-03-25 |
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boltztrap2
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public |
BoltzTraP2 is a modern implementation of the smoothed Fourier interpolation algorithm for electronic bands that formed the base of the original and widely used BoltzTraP code.
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2025-03-25 |
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srtools
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public |
srtools is the toolkit used by members of the Carrington lab for processing and analyzing small RNA sequencing data.
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2025-03-25 |
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r-udpipe
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public |
This natural language processing toolkit provides language-agnostic 'tokenization', 'parts of speech tagging', 'lemmatization' and 'dependency parsing' of raw text. Next to text parsing, the package also allows you to train annotation models based on data of 'treebanks' in 'CoNLL-U' format as provided at <http://universaldependencies.org/format.html>. The techniques are explained in detail in the paper: 'Tokenizing, POS Tagging, Lemmatizing and Parsing UD 2.0 with UDPipe', available at <doi:10.18653/v1/K17-3009>.
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2025-03-25 |
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pyemto
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public |
Easily generate input files and corresponding batch scripts for the EMTO (Exact Muffin-Tin Orbitals) solid-state physics software.
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2025-03-25 |
